1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGCCATCGTTCAAATCCTCTGCAGCTACAGTACCTTGCCTATATATGCAATTGTCACACAGgtgtgtcaatacttgccatgactactgctctgtttattcatcatcaactgtcttattggcaacagaaaaactgagacaccttcgtttttttccttcttttttctatgcaaag
species | Oryza sativa |
transcript | LOC_Os01g66510.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AAATCCTCTGCAGGTACAGTACCTTGCGTATATATGCAATTGTCACACAG ATGGGCTCCTTTTTCAAGAAGGAGATCTTCGACGAGCATGTGCAGCAGGGCEST: gi|88259057|gb|CI363350.1|CI363350
genomic: AAATCCTCTGCAGCTACAGTACCTTGCCTATATATGCAATTGTCACACAGgtgtgtcaat ... ctatgcaaagATGGGCTCCTTTTTCAAGAAGGAGATCTTCGACGAGCATGTGCAGCAGGGC
EST: CCTATATATGCAATTGTCACACAG ATGGGCTCCTTTTTCAAGAAGGAGATCTTCGACGAGCATGTGCAGCAGGGCEST: gi|86504340|gb|CI146973.1|CI146973
genomic: CCTATATATGCAATTGTCACACAGgtgtgtcaat ... ctatgcaaagATGGGCTCCTTTTTCAAGAAGGAGATCTTCGACGAGCATGTGCAGCAGGGC
EST: AAATCCTCTGCAGCTACAGTACCTTGCCTATATATGCAATTGTCACACAG ATGGGCTCCTTTTTCAAGAAGGAGATCTTCGACGAGCATGTGCAGCCAGGC
genomic: AAATCCTCTGCAGCTACAGTACCTTGCCTATATATGCAATTGTCACACAGgtgtgtcaat ... ctatgcaaagATGGGCTCCTTTTTCAAGAAGGAGATCTTCGACGAGCATGTGCAGC-AGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCATCGTTCAAATCCTCTGCAGCTACAGTACCTTGCCTATATATGCAATTGTCACACAGgtgtgtcaatacttgccatgactactgctctgtttattcatcatcaactgtcttattggcaacagaaaaactgagacaccttcgtttttttccttcttttttctatgcaaag
- - - - - - - - - CTGCAG
- - - - - - - - - - GCAGCT