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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGAGATAAGAGAGGAAGTGGGACAAGAAAATTTCTTCCTTTTTGGTGCCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatattttctttctttctttcttttgaacgaagcttggtaagatattttctagtagataagtgatatacaaccattattagatgagcttgacttgc...

Basic information

species Oryza sativa
transcript LOC_Os01g63270.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g63270.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G085577_T01 (Zea mays), 5'ss of exon 13
TGTTGAGATAAGAGAGGAAGTGGGACAAGAAAATTTCTTCCTTTTTGGTGCCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatattttctttctttcttt-cttttgaacgaagc-ttggtaagatattttcta---gtagataagtgatatacaaccattattagatgagcttgacttgc
|||||| ||||||||||| || ||| |||| |||||||||||||| |||||||| || ||| |||||||||||||||||||||||||||| |||||  ||||||||||  |||       |||  || ||||||    | ||      ||||||  ||   |||||| ||  ||     ||   | |   |  |   ||||    
TGTTGAAATAAGAGAGGAGGTTGGAGAAGATAATTTCTTCCTTTTCGGTGCCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagcttcagctaaacttcactgttgaacttttcattcaactcatatttcttataagtagatgagctattattgacttgtttcttac-aatatgacag--

upper sequence: LOC_Os01g63270.1 (Oryza sativa), 5'ss of exon 13
lower sequence: AT3G46970.1 (Arabidopsis thaliana), 5'ss of exon 14
TGTTGAGATAAGAGAGGAAGTGGGACAAGAAAATTTCTTCCTTTTTGGTGCCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatattttctttctttctttcttttgaacga----agcttggtaagatattttctagtagataagtgatatacaaccat-tattagatgagcttgacttgc------------------------------------------------
|||||||||||||||||| || ||  ||||||||||||| ||||||||||| | ||| ||||| ||  || | ||| | || ||  ||||  | ||  ||||| |  | | |||   |||||  |||    |         ||  ||   | |  | | ||     |    ||  |   || | || |  || | ||   |||                                                  
TGTTGAGATAAGAGAGGAGGTTGGCGAAGAAAATTTCTTTCTTTTTGGTGCAACGGCCGATCAGGTCCCTCGACTGCGTAAAGAACGAGAAGACGGACTGgtatgtcactctctccttttctcccttacataaatttttgtctctgtggaacaaatgcgagccaccataccatgaaaggccttataatgaatcacctatgcttctggactttatctgacatgaaacgtttttgtgcctgtaaaaactgattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86481434|gb|CI124067.1|CI124067
EST:     GGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGGAAGAAGCCAAGCAGCTTATAAGGAGTGG
genomic: GGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTT-GAAGAAGCCAAGCAGCTTATAAGGAGTGG
EST: gi|86482301|gb|CI124934.1|CI124934
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86858302|gb|CI271164.1|CI271164
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|701958|gb|D48249.1|D48249
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTT
EST: gi|87031794|gb|CI272495.1|CI272495
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|27577680|gb|CB000375.1|CB000375
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87021435|gb|CI274042.1|CI274042
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86492980|gb|CI135613.1|CI135613
EST:     CCAAGCCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87014843|gb|CI271442.1|CI271442
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86478647|gb|CI121280.1|CI121280
EST:     GGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: GGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86478876|gb|CI121509.1|CI121509
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87020898|gb|CI269615.1|CI269615
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86477787|gb|CI120420.1|CI120420
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86437605|gb|CI119327.1|CI119327
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGATCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86479137|gb|CI121770.1|CI121770
EST:     GGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: GGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87029790|gb|CI274471.1|CI274471
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86596946|gb|CI270742.1|CI270742
EST:     AGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: AGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86480855|gb|CI123488.1|CI123488
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86479936|gb|CI122569.1|CI122569
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86481705|gb|CI124338.1|CI124338
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86477967|gb|CI120600.1|CI120600
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86437645|gb|CI119367.1|CI119367
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGGGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86481170|gb|CI123803.1|CI123803
EST:     CCAAGGCAGATCAAGTTGCTGGTCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86482123|gb|CI124756.1|CI124756
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87014874|gb|CI271473.1|CI271473
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|27578213|gb|CB000908.1|CB000908
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87014109|gb|CI273299.1|CI273299
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAGTGGCTTG                         TCCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87020843|gb|CI269560.1|CI269560
EST:     AAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: AAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86596933|gb|CI270729.1|CI270729
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|29623648|gb|CB628659.1|CB628659
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGCTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86479893|gb|CI122526.1|CI122526
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|25803675|gb|CA759636.1|CA759636
EST:     CCAAGGCAGATCAAATTTCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGCTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86482127|gb|CI124760.1|CI124760
EST:     CAATGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CAA-GGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87021039|gb|CI271846.1|CI271846
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACGCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87016184|gb|CI271595.1|CI271595
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGGGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86478862|gb|CI121495.1|CI121495
EST:     CCAAGTCAGATCAAGTTGCTGGTCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87023294|gb|CI272122.1|CI272122
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87023229|gb|CI272057.1|CI272057
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86437474|gb|CI119196.1|CI119196
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86479165|gb|CI121798.1|CI121798
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86436854|gb|CI118576.1|CI118576
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87021452|gb|CI274059.1|CI274059
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCAAGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86479350|gb|CI121983.1|CI121983
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGTT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87020889|gb|CI269606.1|CI269606
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGTAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86437475|gb|CI119197.1|CI119197
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87014799|gb|CI271398.1|CI271398
EST:     AAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTCTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: AAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|29625893|gb|CB630904.1|CB630904
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGCTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86480129|gb|CI122762.1|CI122762
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87014916|gb|CI271515.1|CI271515
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|11026415|gb|AU163016.1|AU163016
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87027716|gb|CI274280.1|CI274280
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86479545|gb|CI122178.1|CI122178
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86437485|gb|CI119207.1|CI119207
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|8858445|gb|AU095763.1|AU095763
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86479788|gb|CI122421.1|CI122421
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86437828|gb|CI119748.1|CI119748
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86436776|gb|CI118498.1|CI118498
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86479287|gb|CI121920.1|CI121920
EST:     GGCAGATCAAGTTGCTGGGCTGAGGAGGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: GGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86436944|gb|CI118666.1|CI118666
EST:     GCAGATCCAAGTTGCTGGCCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: GCAGAT-CAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86597032|gb|CI272627.1|CI272627
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86482107|gb|CI124740.1|CI124740
EST:     CCAAGCCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86437211|gb|CI118933.1|CI118933
EST:     CCAAGCCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86482645|gb|CI125278.1|CI125278
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87021462|gb|CI274069.1|CI274069
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86479407|gb|CI122040.1|CI122040
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87020932|gb|CI269649.1|CI269649
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86596976|gb|CI270772.1|CI270772
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86479682|gb|CI122315.1|CI122315
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCCTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|87021119|gb|CI271926.1|CI271926
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|218500897|gb|FG952814.1|FG952814
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGCTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86597018|gb|CI272613.1|CI272613
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
EST: gi|86480180|gb|CI122813.1|CI122813
EST:     CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG                         TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTGAGATAAGAGAGGAAGTGGGACAAGAAAATTTCTTCCTTTTTGGTGCCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatattttctttctttctttcttttgaacgaagcttggtaagatattttctagtagataagtgatatacaaccattattagatgagcttgacttgc

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA