1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
TTATCTCAGCGTACGATTTCAGGATCTCTCTTGAAGTATCTATCTAAGCTCCAGgtgatgttctgttctaactgaaatgcctcagatggactcagtttgacatgtgaaggtatacaatttagttaaaagtaaaaaaaatcattgttatctgtgttcag
species | Oryza sativa |
transcript | LOC_Os01g60440.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTCAGCGTACGATTTCAGGATCTCTCTTGAAGTATCTATCTAAGCTCCAG GTTGATGAAGAACCTGCGATCAGGACAAACACTACAATTCTTCTTGGAAATEST: gi|701421|gb|D47712.1|D47712
genomic: CTCAGCGTACGATTTCAGGATCTCTCTTGAAGTATCTATCTAAGCTCCAGgtgatgttct ... ctgtgttcagGTTGATGAAGAACCTGCGATCAGGACAAACACTACAATTCTTCTTGGAAAT
EST: CTCAGCGTACGATTTCAGGATCTCTCTTGAAGTATCTATCTAAGCTGCAG GTTGATGAAGAACCTGCGATCAGGACAAACACTACAATTCTTCTTGGAAATEST: gi|109974420|gb|DT806899.1|DT806899
genomic: CTCAGCGTACGATTTCAGGATCTCTCTTGAAGTATCTATCTAAGCTCCAGgtgatgttct ... ctgtgttcagGTTGATGAAGAACCTGCGATCAGGACAAACACTACAATTCTTCTTGGAAAT
EST: GATTTCAGGATCTCTCTTGAAGTATCTATCTAAGCTCCAG GTTGATGAAGAACCTGCGATCAGGACAAACACTACAAGTCTTCTTGGAAATEST: gi|701323|gb|D47614.1|D47614
genomic: GATTTCAGGATCTCTCTTGAAGTATCTATCTAAGCTCCAGgtgatgttct ... ctgtgttcagGTTGATGAAGAACCTGCGATCAGGACAAACACTACAATTCTTCTTGGAAAT
EST: CTCAGCGTACGATTTCAGGATCTCTCTTGAAGTATCTATCTAAGCTCCAG GTTGATGAAGAACCTGCGATCAGGACAAACACTACAATTCTTCTTGGAAATEST: gi|55411921|gb|CV724297.1|CV724297
genomic: CTCAGCGTACGATTTCAGGATCTCTCTTGAAGTATCTATCTAAGCTCCAGgtgatgttct ... ctgtgttcagGTTGATGAAGAACCTGCGATCAGGACAAACACTACAATTCTTCTTGGAAAT
EST: AGCGTACGATGTCAGGATCTCTCTTGAAGTATCTATCTAAGCTCCAG GTTGATGAAGAACCTGCGATCAGGACAAACACTACAATTCTTCTTGGAAAC
genomic: AGCGTACGATTTCAGGATCTCTCTTGAAGTATCTATCTAAGCTCCAGgtgatgttct ... ctgtgttcagGTTGATGAAGAACCTGCGATCAGGACAAACACTACAATTCTTCTTGGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATCTCAGCGTACGATTTCAGGATCTCTCTTGAAGTATCTATCTAAGCTCCAGgtgatgttctgttctaactgaaatgcctcagatggactcagtttgacatgtgaaggtatacaatttagttaaaagtaaaaaaaatcattgttatctgtgttcag
- - - - - - - - - - - - - - - TTGAAG