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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAGgtatgtgctgactagcaattatatttactctgtacctcatagggagaatactactgcttctaatatgtgtatcaacag

Basic information

species Oryza sativa
transcript LOC_Os01g56630.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56630.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G079389_T01 (Zea mays), 5'ss of exon 13
TCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAGgtatgtgctgactagcaattatatttactctgtacctcatagggagaatactactgcttctaatatgtgtatcaacag
|| | ||| |||||||| ||||| || ||||||||||||||||| || || || | ||| || ||||||||||||||||| ||||||||||||||||||  || |  ||| ||   ||||||         | |||  || ||  ||||||      |  | | || ||||
TCTATAGAGCTTCACATATATACAGATTTCTTAAGAATTGTTCTGGAGATAATTATTGCCATCCTTACATATGCATTGCCCAGAAATCCTGAGgtatgtattggcctgcagttcagtttactgg-------acaggaggactagcactgcta-----acatttttctacag

upper sequence: LOC_Os01g56630.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G078576_T04 (Zea mays), 5'ss of exon 13
TCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAGgtatgtgctgactagcaattatatttactctgtacctcatagggagaatactactgcttctaatatgtgtatcaacag
|| ||||| |||||||| ||||| || ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||  || |  ||||||   ||||||    |           || ||  ||||||||||| || | | |  ||||
TCTACAGAGCTTCACATATATACAGATTTCTTGAGAATTGTTCTGGAAATAATCAATGCAATCCTTACATATGCATTGCCCAGAAATCCCGAGgtatgtattggcctgcaattcagtttacttgaca----------ggactagcactgcttctaacatttttgt--acag

upper sequence: LOC_Os01g56630.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GLYMA10G00550.1 (Glycine max), 5'ss of exon 13
TCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAGgtatgtgctgactagcaattatatttactctgtacctcatagggagaatactactgcttctaatatgtgtatcaacag-------------------------------------------------------------
||  ||||  | || || ||||| |||||||| ||  |||| |||||||| || ||||||||||| || |||| | |||||  |||||||||||||     | |    |   |  ||| | |  | |  | | |    |   ||  ||  || || |  |  |  ||||||                                                             
TCAGCAGAGTTGCAGATATATACTGACTTCTTGAGGCTTGTACTAGAAATTATAAATGCAATTCTGACTTATGTACTGCCTCAAAATCCTGAGgtacaatttaatgttcctcttgattaatt--gaaaattaaaatatgcgcac--ctattttta-tgcggttcccaacagtcaaaaactacatttgcattctgatcttttacatcaaacgtcttgcttgtgactgagacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58684083|gb|CK072770.1|CK072770
EST:     TAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAG                         GTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAAC
genomic: TAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAGgtatgtgctg ... gtatcaacagGTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAAC
EST: gi|426809|gb|D22882.1|D22882
EST:     TAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAG                         GTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAAC
genomic: TAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAGgtatgtgctg ... gtatcaacagGTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAAC
EST: gi|58678344|gb|CK067031.1|CK067031
EST:     TAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAG                         GTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAAC
genomic: TAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAGgtatgtgctg ... gtatcaacagGTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAAC
EST: gi|29639051|gb|CB644060.1|CB644060
EST:     TAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAG                         GTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAAC
genomic: TAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAGgtatgtgctg ... gtatcaacagGTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAAC