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CTATGCCCTTATCAGGTTTTGGAGGAAGTGGATCATCATTTGCTTCAGATGATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAGgtattgatgtgcctcttgctttatcctttgaatttgttgtgttggttgatgcaatgtgatctgtgcagtcttgttatgcattattacttatgtgacctgt...
species | Oryza sativa |
transcript | LOC_Os01g46510.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAG CTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGACEST: gi|58664662|gb|CK053348.1|CK053348
genomic: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAGgtattgatgt ... gcttctgcagCTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGAC
EST: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAG CTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGACEST: gi|58666107|gb|CK054793.1|CK054793
genomic: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAGgtattgatgt ... gcttctgcagCTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGAC
EST: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAG CTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGACEST: gi|58666827|gb|CK055513.1|CK055513
genomic: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAGgtattgatgt ... gcttctgcagCTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGAC
EST: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAG CTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGACEST: gi|58658218|gb|CK046898.1|CK046898
genomic: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAGgtattgatgt ... gcttctgcagCTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGAC
EST: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAG CTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGACEST: gi|58612809|gb|CK040521.1|CK040521
genomic: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAGgtattgatgt ... gcttctgcagCTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGAC
EST: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAG CTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGACEST: gi|86889062|gb|CI314678.1|CI314678
genomic: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAGgtattgatgt ... gcttctgcagCTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGAC
EST: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAG CTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGACEST: gi|25804329|gb|CA760290.1|CA760290
genomic: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAGgtattgatgt ... gcttctgcagCTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGAC
EST: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAG CTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGACEST: gi|58656516|gb|CK045196.1|CK045196
genomic: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAGgtattgatgt ... gcttctgcagCTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGAC
EST: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAG CTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGACEST: gi|88399115|gb|CI603782.1|CI603782
genomic: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAGgtattgatgt ... gcttctgcagCTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGAC
EST: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAA-TTCCAGTTATACAG CTGGGAGACCTACCAACCCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGA
genomic: GATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAGgtattgatgt ... gcttctgcagCTGGGAGACCTACCAA-CCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATGCCCTTATCAGGTTTTGGAGGAAGTGGATCATCATTTGCTTCAGATGATCCATTTTCCTCCAAAGAAGGGCCTCCTCAAAATTTCCAGTTATACAGgtattgatgtgcctcttgctttatcctttgaatttgttgtgttggttgatgcaatgtgatctgtgcagtcttgttatgcattattacttatgtgacctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC