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TTGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGgtagctgatctttcatctcttacatacgatcccggactgaattttgttttaacattgcgaggaataaaaaactgaatagtaatgataaacttgactgttc...
species | Oryza sativa |
transcript | LOC_Os01g33420.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AACTACAGGAGCANTAGCACGTGCATGGATAGCAACTGGGAGTAAAG GAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAAEST: gi|88906563|gb|CI375635.1|CI375635
genomic: AACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGgtagctgatc ... cattatatagGAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAA
EST: TGTAACTACAGGAGCACTAGCACGTGCATGGATAGCAACTGGGAGTAAAG GAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAAEST: gi|88508920|gb|CI436426.1|CI436426
genomic: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGgtagctgatc ... cattatatagGAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAA
EST: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAG GAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAAEST: gi|86833000|gb|CI333599.1|CI333599
genomic: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGgtagctgatc ... cattatatagGAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAA
EST: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAG GAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAAEST: gi|88245218|gb|CI245067.1|CI245067
genomic: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGgtagctgatc ... cattatatagGAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAA
EST: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAG GAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAAEST: gi|86535277|gb|CI175483.1|CI175483
genomic: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGgtagctgatc ... cattatatagGAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAA
EST: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAG GAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAG-AAGATAAEST: gi|88829511|gb|CI074381.1|CI074381
genomic: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGgtagctgatc ... cattatatagGAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAA
EST: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAG GAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAAEST: gi|89174390|gb|CI110588.1|CI110588
genomic: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGgtagctgatc ... cattatatagGAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAA
EST: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAG GAGAAATATACCTGGCGTTCTTCAACCTNGACTCCATGAGCAGGAAGATAAEST: gi|29675804|gb|CB672079.1|CB672079
genomic: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGgtagctgatc ... cattatatagGAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAA
EST: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAG GAGAAATATACTTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAAEST: gi|88478289|gb|CI415560.1|CI415560
genomic: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGgtagctgatc ... cattatatagGAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAA
EST: GATAGCAACTGGGAGTAAAG GAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAAATAAEST: gi|86869834|gb|CI316562.1|CI316562
genomic: GATAGCAACTGGGAGTAAAGgtagctgatc ... cattatatagGAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAA
EST: TGGAAGTACAGGAGCAGTAGCACGTGCATTGATAGCAACTGGGAGTAAAG GAGAAATATACCTGGCCTTCTTCAACCTTGACTCCATGAGCAGGAAGATAAEST: gi|29675806|gb|CB672081.1|CB672081
genomic: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGgtagctgatc ... cattatatagGAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAA
EST: TGTAATTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAG GAGAAATATACCTGGCGTTTTTCAACCTTGACTCCATGAGCAGGAAGATAAEST: gi|88227256|gb|CI228369.1|CI228369
genomic: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGgtagctgatc ... cattatatagGAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAA
EST: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAG GAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAA
genomic: TGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGgtagctgatc ... cattatatagGAGAAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGgtagctgatctttcatctcttacatacgatcccggactgaattttgttttaacattgcgaggaataaaaaactgaatagtaatgataaacttgactgttc
- - - - - GGAGCA
- - - - - - GAGCAG
- - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa