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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCATTATCGGAAGCGACACGTTCCTGATGAGCCTGACAGTGCTGATAAAGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttgttttttttcgttgtttgttcattatgtgttctatggtttctatgtgggggaaatctttaagtattctatgtcgctcttggatgtatcttg...

Basic information

species Oryza sativa
transcript LOC_Os01g16170.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29677586|gb|CB673861.1|CB673861
EST:     AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG                         ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: gi|29641025|gb|CB646032.1|CB646032
EST:     AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG                         ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: gi|29663395|gb|CB659670.1|CB659670
EST:     AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG                         ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: gi|29678252|gb|CB674527.1|CB674527
EST:     AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG                         ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: gi|29664316|gb|CB660591.1|CB660591
EST:     AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG                         ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: gi|29621708|gb|CB626719.1|CB626719
EST:     AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG                         ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: gi|29681320|gb|CB677595.1|CB677595
EST:     AGTTTAATGGATAGCAACTGAGAATATTATTACCTTTTTCGACATAACAG                         ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: gi|29676459|gb|CB672734.1|CB672734
EST:     AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG                         ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: gi|38481874|gb|CF965943.1|CF965943
EST:     AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG                         ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: gi|29677836|gb|CB674111.1|CB674111
EST:     AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG                         ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: gi|29639706|gb|CB644715.1|CB644715
EST:     AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG                         ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC