1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAAAGCTATTCCAGGATGGAAGGTTGTTTATTCAGGTGACACGAGGCCCTGCCCAGCTCTTGTAGATGCGTCCAGAGATGCCACTGTACTAATACATGAGgtaagatgaacataaatcttttggacaactaattccattattaccaacttgatatccactgccatttccatggtggctatgattctatattcctcccttt...
species | Oryza sativa |
transcript | LOC_Os01g13150.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GCCCAGGTCTTGTAGATGCGTCCAGAGATGCCACTGTAGTAATACATGAG GCAACATTTGAGGACAGTATGAAGGATGAGGCGATCGCTAGGAACCATAGTEST: gi|29664358|gb|CB660633.1|CB660633
genomic: GCCCAGCTCTTGTAGATGCGTCCAGAGATGCCACTGTACTAATACATGAGgtaagatgaa ... gtttctccagGCAACATTTGAGGACAGTATGAAGGATGAGGCGATCGCTAGGAACCATAGT
EST: GCCCAGCTCTTGTAGATGCGTCCAGAGATGCCACTGTACTAATACATGAG GCAACATTTGAGGACAGTATGAAGGATGAGGCGATCGCTAGGAACCATAGTEST: gi|88503296|gb|CI430802.1|CI430802
genomic: GCCCAGCTCTTGTAGATGCGTCCAGAGATGCCACTGTACTAATACATGAGgtaagatgaa ... gtttctccagGCAACATTTGAGGACAGTATGAAGGATGAGGCGATCGCTAGGAACCATAGT
EST: TCTTGTAGATGCGTCCAGAGATGCCACTGTACTAATACATGAG GCAACATTTGAGGACAGTATGAAGGATGAGGCGATCGCTAGGAACCATAGTEST: gi|29663704|gb|CB659979.1|CB659979
genomic: TCTTGTAGATGCGTCCAGAGATGCCACTGTACTAATACATGAGgtaagatgaa ... gtttctccagGCAACATTTGAGGACAGTATGAAGGATGAGGCGATCGCTAGGAACCATAGT
EST: GCCCAGCTCTTGTAGATGCGTCCAGAGATGCCACTGTATTAATACATGAG GCAACATTTGAGGACAGTATGAAGGATGAGGCGATCGCTAGGACCCATAGTEST: gi|86437000|gb|CI118722.1|CI118722
genomic: GCCCAGCTCTTGTAGATGCGTCCAGAGATGCCACTGTACTAATACATGAGgtaagatgaa ... gtttctccagGCAACATTTGAGGACAGTATGAAGGATGAGGCGATCGCTAGGAACCATAGT
EST: GCCCAGCTCTTGTAGATGCGTCCAGAGATGCCACTGTACTAATACATGAG GCAACATTTGAGGACAGTATGAAGGATGAGGCGATCGCTAGGAACCATAGTEST: gi|88256071|gb|CI358459.1|CI358459
genomic: GCCCAGCTCTTGTAGATGCGTCCAGAGATGCCACTGTACTAATACATGAGgtaagatgaa ... gtttctccagGCAACATTTGAGGACAGTATGAAGGATGAGGCGATCGCTAGGAACCATAGT
EST: GCCCAGCTCTTGTAGATGCGTCCAGAGATGCCACTGTACTAATACATGAG GCAACATTTGAGGACAGTATGAAGGATGAGGCGATCGCTAGGAACCATAGT
genomic: GCCCAGCTCTTGTAGATGCGTCCAGAGATGCCACTGTACTAATACATGAGgtaagatgaa ... gtttctccagGCAACATTTGAGGACAGTATGAAGGATGAGGCGATCGCTAGGAACCATAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGCTATTCCAGGATGGAAGGTTGTTTATTCAGGTGACACGAGGCCCTGCCCAGCTCTTGTAGATGCGTCCAGAGATGCCACTGTACTAATACATGAGgtaagatgaacataaatcttttggacaactaattccattattaccaacttgatatccactgccatttccatggtggctatgattctatattcctcccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctcc