1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatattgttattgttatatttacatacttgttatcatatttaaaagcttcatattgtatgtacctttgaaaaaaaaagttccatactgtagcttcttttgttctcatttcttggtttcaaagcatcagcatcattaccgatataaaatatacccatttcctcagtcatcttccccgactcttgtatctttcacag
species | Oryza sativa |
transcript | LOC_Os01g08700.3 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|86873316|gb|CI341541.1|CI341541
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|88689129|gb|CI732705.1|CI732705
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|33684724|gb|CF312963.1|CF312963
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|396941313|gb|HO188522.1|HO188522
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACGTTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|86884433|gb|CI337001.1|CI337001
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTCCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|38481214|gb|CF965303.1|CF965303
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACGTTGTTTCAGCGTCGGCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|88689326|gb|CI732902.1|CI732902
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|88690745|gb|CI734824.1|CI734824
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|33793269|gb|CF322515.1|CF322515
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|29668032|gb|CB664307.1|CB664307
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAEST: gi|88689955|gb|CI734034.1|CI734034
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGA
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|88691766|gb|CI733343.1|CI733343
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|88690455|gb|CI734534.1|CI734534
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|86872020|gb|CI333181.1|CI333181
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGGTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|88273155|gb|CI388611.1|CI388611
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|88691375|gb|CI733958.1|CI733958
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|55410210|gb|CV722586.1|CV722586
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|86599150|gb|CI355767.1|CI355767
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: TCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTCCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|29666878|gb|CB663153.1|CB663153
genomic: TCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|38477853|gb|CF961986.1|CF961986
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACGTTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTEST: gi|86885526|gb|CI318677.1|CI318677
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCT
EST: ACATTGTTTCACCCTCACCGACCAAGGCTTCACCTGCAATCGTTCTGCAG GCCGAGAAGGACTTCCACCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|88690675|gb|CI734754.1|CI734754
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|88689073|gb|CI732649.1|CI732649
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|29657062|gb|CB653337.1|CB653337
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|86905138|gb|CI289285.1|CI289285
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGEST: gi|86860507|gb|CI323433.1|CI323433
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAG
EST: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG GCCGAGAAGGACTTGCAGCCCCTGGATTGCTCGAGATGATGAGCAAGGTCA
genomic: ACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatat ... tctttcacagGCCGAGAAGGACTTGCAG-CCCTGGATTGCTCGAGATGATGAGCAAGGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGgtcaagatattgttattgttatatttacatacttgttatcatatttaaaagcttcatattgtatgtacctttgaaaaaaaaagttccatactgtagcttcttttgttctcatttcttggtttcaaagcatcagcatcattaccgatataaaatatacccatttcctcagtcatcttccccgactcttgtatctttcacag
- - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG