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TGCTCTTGGAGCTGGCCCAGTTCCAGCATTGCTCCTTCCTGAAATATTTGCCTCCAGAATAAGGGCTAAAGCTGTTGCATTATCTCTGGGCATGCACTGGgtaagttatgcttggtgtgttggatgaagtttgacagatttgtgatgtggttagctataatattagtttaactgcttttctatataattgaaaatatttt...
species | Oryza sativa |
transcript | LOC_Os01g04190.3 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CCTCCAGAATAAGGGCTAAAGCTGTTGCATTATCTCTGGGCATGCACTGG GTTTCGAACTTCTTTATTGGCCTCTACTTCTTGAGCGTCGTCAACAAATTCEST: gi|38481055|gb|CF965144.1|CF965144
genomic: CCTCCAGAATAAGGGCTAAAGCTGTTGCATTATCTCTGGGCATGCACTGGgtaagttatg ... ttttgggcagGTTTCGAACTTCTTTATTGGCCTCTACTTCTTGAGCGTCGTCAACAAATTC
EST: CCTCCAGAATAAGGGCTAAAGCTGTTGCATTATCTCTGGGCATGCACTGG GTTTCGAACTTCTTTATTGEST: gi|58598313|gb|CK008841.1|CK008841
genomic: CCTCCAGAATAAGGGCTAAAGCTGTTGCATTATCTCTGGGCATGCACTGGgtaagttatg ... ttttgggcagGTTTCGAACTTCTTTATTG
EST: CCTCCAGAATAAGGGCTAAAGCTGTTGCATTATCTCTGGGCATGCACTGG GTTTCGAACTTCTTTATTGGGCTCTACTTCTTGAGCGEST: gi|27554385|gb|CA998285.1|CA998285
genomic: CCTCCAGAATAAGGGCTAAAGCTGTTGCATTATCTCTGGGCATGCACTGGgtaagttatg ... ttttgggcagGTTTCGAACTTCTTTATTGGCCTCTACTTCTTGAGCG
EST: CCTCCAGAATAAGGGCTAAAGCTGTTGCATTATCTCTGGGCATGCACTGG GTTTCGAACTTCTTTATTGGCCTCTACTTCTTGAGCGEST: gi|27576947|gb|CA999641.1|CA999641
genomic: CCTCCAGAATAAGGGCTAAAGCTGTTGCATTATCTCTGGGCATGCACTGGgtaagttatg ... ttttgggcagGTTTCGAACTTCTTTATTGGCCTCTACTTCTTGAGCG
EST: CCTCCAGAATAAGGGCTAAAGCTGTTGCATTATCTCTGGGCATGCACTGG GTTTCGAACTTCTTTATTGGCCTCTACTTCTTGAGCGTCGTCAACAAATTC
genomic: CCTCCAGAATAAGGGCTAAAGCTGTTGCATTATCTCTGGGCATGCACTGGgtaagttatg ... ttttgggcagGTTTCGAACTTCTTTATTGGCCTCTACTTCTTGAGCGTCGTCAACAAATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCTTGGAGCTGGCCCAGTTCCAGCATTGCTCCTTCCTGAAATATTTGCCTCCAGAATAAGGGCTAAAGCTGTTGCATTATCTCTGGGCATGCACTGGgtaagttatgcttggtgtgttggatgaagtttgacagatttgtgatgtggttagctataatattagtttaactgcttttctatataattgaaaatatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT