1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAGgtatctcagttgtgctgctatttaatacttaagatcgctcatgtgttttgcatgcctagcttagcagcatggtgtattcgcaatcctgtttcctggttta...
species | Oryza sativa |
transcript | LOC_Os12g40830.3 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CCCTTATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAG GCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGGCTGGGTTTGACCCEST: gi|427643|gb|D23776.1|D23776
genomic: CCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAGgtatctcagt ... ttttctgcagGCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGA-GCTGGGTTTGACCC
EST: ACCCTGNTAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAG GCACTCCTAAGGEST: gi|88527260|gb|CI455400.1|CI455400
genomic: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAGgtatctcagt ... ttttctgcagGCACTCCTAAGG
EST: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAG GCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCCEST: gi|88266886|gb|CI368662.1|CI368662
genomic: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAGgtatctcagt ... ttttctgcagGCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCC
EST: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAG GCACTCCTAAGGAGAACTGTGGAAGTCTATAAAAGAGCTGGGTTTGACCCCEST: gi|86885325|gb|CI317085.1|CI317085
genomic: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAGgtatctcagt ... ttttctgcagGCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCC
EST: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAG GCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCCEST: gi|86890174|gb|CI321351.1|CI321351
genomic: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAGgtatctcagt ... ttttctgcagGCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCC
EST: ACTGGCGGTATCCAGTTTGCA- GCACTCCTAAGGAGAACTGT-GAAGACTATAAAAGAGCTGGCTTTGACCCCEST: gi|13165352|gb|AU174149.1|AU174149
genomic: ACTGGCGGTATCCAGTTTGCAGgtatctcagt ... ttttctgcagGCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCC
EST: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAG GCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCCEST: gi|88540839|gb|CI468912.1|CI468912
genomic: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAGgtatctcagt ... ttttctgcagGCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCC
EST: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAG GCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCCEST: gi|89185094|gb|CI049640.1|CI049640
genomic: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAGgtatctcagt ... ttttctgcagGCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCC
EST: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAG GCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCCEST: gi|88227203|gb|CI228316.1|CI228316
genomic: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAGgtatctcagt ... ttttctgcagGCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCC
EST: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAG GCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCCEST: gi|88473155|gb|CI410426.1|CI410426
genomic: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAGgtatctcagt ... ttttctgcagGCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCC
EST: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAG GCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCCEST: gi|88543303|gb|CI473300.1|CI473300
genomic: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAGgtatctcagt ... ttttctgcagGCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCC
EST: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAG GCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCCEST: gi|88546837|gb|CI477088.1|CI477088
genomic: ACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAGgtatctcagt ... ttttctgcagGCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCC
EST: ATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAG GCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCC
genomic: ATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAGgtatctcagt ... ttttctgcagGCACTCCTAAGGAGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAGgtatctcagttgtgctgctatttaatacttaagatcgctcatgtgttttgcatgcctagcttagcagcatggtgtattcgcaatcctgtttcctggttta
- - - - - - - - - GAGAGG