1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTCAAGTAAAGAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAATATTGCATGgtaaaaggctgtaacacagactcagatatgggatattgtcataatatttacgttgctttccctgacattttacag
species | Oryza sativa |
transcript | LOC_Os12g19290.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAATATTGCATG AATTTTGCTGATACTGAAGAGGAACCTCAAAGCAGTTCCTTGAACTCAACGEST: gi|88833981|gb|CI077462.1|CI077462
genomic: GAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAATATTGCATGgtaaaaggct ... cattttacagAA-TTTGCTGATACTGAAGAGGAACCTCAAAGCAGTTCCTTGAACTCAACG
EST: GAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAATATTGCATG AATTTGCTGATACTGAAGAGGAACCTCAAAGCAGTTCCTTGAACTCAACGCEST: gi|86429714|gb|CI076395.1|CI076395
genomic: GAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAATATTGCATGgtaaaaggct ... cattttacagAATTTGCTGATACTGAAGAGGAACCTCAAAGCAGTTCCTTGAACTCAACGC
EST: AAATCAATATTGCATG AATTTGCTGATACTGAAGAGGAACCTCAAAGCAGTTCCTTGAACTCAACGCEST: gi|86539526|gb|CI179732.1|CI179732
genomic: AAATCAATATTGCATGgtaaaaggct ... cattttacagAATTTGCTGATACTGAAGAGGAACCTCAAAGCAGTTCCTTGAACTCAACGC
EST: GAGGCGGACCTTTAAATCAATATTGCATG AATTTGCTGATACTGAAGAGGAACCTCTAAGCAGTTCCTTGAACTCAACGCEST: gi|87031077|gb|CI362291.1|CI362291
genomic: GAGGCGGACCTTTAAATCAATATTGCATGgtaaaaggct ... cattttacagAATTTGCTGATACTGAAGAGGAACCTCAAAGCAGTTCCTTGAACTCAACGC
EST: GACCTTTAAATCAATATTGCATG AATTTGCTGATACTGAAGAGGAACCTCAAAGCAAGTTCCTTGAACTCAACGEST: gi|58694229|gb|CK082916.1|CK082916
genomic: GACCTTTAAATCAATATTGCATGgtaaaaggct ... cattttacagAATTTGCTGATACTGAAGAGGAACCTCAAAGC-AGTTCCTTGAACTCAACG
EST: GAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAATATTGCATG AATTTGCTGATACTGAAGAGGAACCTCAAAGCAGTTCCTTGAACTCAACGC
genomic: GAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAATATTGCATGgtaaaaggct ... cattttacagAATTTGCTGATACTGAAGAGGAACCTCAAAGCAGTTCCTTGAACTCAACGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAAGTAAAGAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAATATTGCATGgtaaaaggctgtaacacagactcagatatgggatattgtcataatatttacgttgctttccctgacattttacag
- - - - - - AAAGAA