1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAGgtaataaatctgataaattgttactcctttaaaatacattcaagtagtaggatttaaaccagtactaatattgctctggtattataatttttttattgtt...
species | Oryza sativa |
transcript | LOC_Os12g13460.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAG GAAATCTGAAGCCTGGCTGACGGGTGTAATANGGATTTCACTGCCCGCATGEST: gi|86889885|gb|CI333536.1|CI333536
genomic: TCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAGgtaataaatc ... ttctttgcagGAAATCTGAAGCCTGGCTGACGGGTGTAATAGGGATTTCACTGCCCGCATG
EST: TCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAG GAAATCTGAAGCCTGGCTGACGGGTGTAATAGGGATTTCACTGCCCGCATGEST: gi|88286709|gb|CI517820.1|CI517820
genomic: TCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAGgtaataaatc ... ttctttgcagGAAATCTGAAGCCTGGCTGACGGGTGTAATAGGGATTTCACTGCCCGCATG
EST: TAATGATCACATCCAGTTGAAGTGCATTAGAAG GAAATCTGAAGCCTGGCTGACGGGGTGTAATAGGGATTTCACTGCCCGCATEST: gi|88998204|gb|CI038089.1|CI038089
genomic: TAATGATCACATCCAGTTGAAGTGCATTAGAAGgtaataaatc ... ttctttgcagGAAATCTGAAGCCTGGCTGAC-GGGTGTAATAGGGATTTCACTGCCCGCAT
EST: TCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAG GAAATCTGAAGCCTGGCTGACGGGTGTAATAGGGATTTCACTGCCCGCATGEST: gi|58585967|gb|CF984275.1|CF984275
genomic: TCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAGgtaataaatc ... ttctttgcagGAAATCTGAAGCCTGGCTGACGGGTGTAATAGGGATTTCACTGCCCGCATG
EST: TCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAG GAAATCTGAAGCCTGGCTGACGGGTGTAATAGGGATTTCAEST: gi|58611417|gb|CK039129.1|CK039129
genomic: TCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAGgtaataaatc ... ttctttgcagGAAATCTGAAGCCTGGCTGACGGGTGTAATAGGGATTTCA
EST: TCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAG GAAATCTGAAGCCTGGCTGACGGGTGTAATAGGGATTTCACTGCCCGCATGEST: gi|29657715|gb|CB653990.1|CB653990
genomic: TCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAGgtaataaatc ... ttctttgcagGAAATCTGAAGCCTGGCTGACGGGTGTAATAGGGATTTCACTGCCCGCATG
EST: TCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAG GAAATCTGAAGCCTGGCTGACGGGTGTAATAGGGATTTCACTGCCCGCATG
genomic: TCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAGgtaataaatc ... ttctttgcagGAAATCTGAAGCCTGGCTGACGGGTGTAATAGGGATTTCACTGCCCGCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAGgtaataaatctgataaattgttactcctttaaaatacattcaagtagtaggatttaaaccagtactaatattgctctggtattataatttttttattgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG