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AGACCGGAAGATCTATGGGCTAACCACTCAAAAGTAGTCCTGCCAAATCCACATATGAAGGATACTGCATCATGGAGAGCCATCCAAAAGgtatgatttgactatagttcactgaattcgctacgcaaacatcactttaaggttattgcatatagcgggctcatcttttcgcttatgcttatcagccaaa...
species | Oryza sativa |
transcript | LOC_Os12g01140.3 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGCCAAATCCACATATGAAAGATACTGCATCATGGAGAGCCATCCAAAAG GTTCTCGAGAGTGGTGAAAGTATTGGTTTAAAACATTTTAGGCCAGTAAAAEST: gi|29672018|gb|CB668293.1|CB668293
genomic: TGCCAAATCCACATATGAAGGATACTGCATCATGGAGAGCCATCCAAAAGgtatgatttg ... tctcttgtagGTTCTCGAGAGTGGTGAAAGTATTGGTTTAAAACATTTTAGGCCAGTAAAA
EST: TGCCAAATCCACATATGAAGGATACTGCATCATGGAGAGCCATCCAAAAG GTTCTCTAGAGTGGTGAAAGTATTGGTTTAAAACATTTTAGGCCAGTAAAAEST: gi|29613611|gb|CB618624.1|CB618624
genomic: TGCCAAATCCACATATGAAGGATACTGCATCATGGAGAGCCATCCAAAAGgtatgatttg ... tctcttgtagGTTCTCGAGAGTGGTGAAAGTATTGGTTTAAAACATTTTAGGCCAGTAAAA
EST: TGCCAAATCCACATATGAAAGATACTGCATCATGGAGAGCCATCCAAAAG GTTCTCGAGAGTGGTGAAAGTATTGGTTTAAAACATTTTAGGCCAGTAAAAEST: gi|29627346|gb|CB632357.1|CB632357
genomic: TGCCAAATCCACATATGAAGGATACTGCATCATGGAGAGCCATCCAAAAGgtatgatttg ... tctcttgtagGTTCTCGAGAGTGGTGAAAGTATTGGTTTAAAACATTTTAGGCCAGTAAAA
EST: TGCCAAATCCACATATGAAAGATACTGCATCATGGAGAGCCATCCAAAAG -TTCTCGAGAGTGGTGAAAGTATTGGTTTAAAACATTTTAGGCCAGTAAAAEST: gi|29641400|gb|CB646407.1|CB646407
genomic: TGCCAAATCCACATATGAAGGATACTGCATCATGGAGAGCCATCCAAAAGgtatgatttg ... tctcttgtagGTTCTCGAGAGTGGTGAAAGTATTGGTTTAAAACATTTTAGGCCAGTAAAA
EST: TGCCAAATCCACATATGAAGGATACTGCATCATGGAGAGCCATCCAAAAG GTTCTCGAGAGTGGTGAAAGTATTGGTTTAAAACATTTTAGGCCAGTAAAA
genomic: TGCCAAATCCACATATGAAGGATACTGCATCATGGAGAGCCATCCAAAAGgtatgatttg ... tctcttgtagGTTCTCGAGAGTGGTGAAAGTATTGGTTTAAAACATTTTAGGCCAGTAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACCGGAAGATCTATGGGCTAACCACTCAAAAGTAGTCCTGCCAAATCCACATATGAAGGATACTGCATCATGGAGAGCCATCCAAAAGgtatgatttgactatagttcactgaattcgctacgcaaacatcactttaaggttattgcatatagcgggctcatcttttcgcttatgcttatcagccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA