1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTATTTCGTGCTGAGGGGCGAGATATCTGCCTTGCTCGAGAAGAGGAGAAGTGGCTTGTATATGATAACTCACTCAGGGAAGTCAAGgcaagtttgactcgcatttatcctgcattttcttttggccttttgccagataaccccttttcatgacgagactttctccatgcag
species | Oryza sativa |
transcript | LOC_Os11g38610.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGAGGAGAAGTGGCTTGTATATGATAACTCACTCAGGGAAGTCAAG GAATTTGATTCATGGGAGAAAGTGCTTGAAGAATACAGTCGTTCCAGTTTCEST: gi|87014789|gb|CI269496.1|CI269496
genomic: GAGAAGAGGAGAAGTGGCTTGTATATGATAACTCACTCAGGGAAGTCAAGgcaagtttga ... ctccatgcagGAATTTGATTCATGGGAGAAAGTGCTTGAAGAATACAGTCGTTCCAGTTTC
EST: GAGAAGAGGAGAAGTGGCTTGTATATGATAACTCACTCAGGGAAGTCAAG GAATTTGATTCATGGGAGAAAGTGCTTGAAGAATACAGTCGTTCCAGTTTCEST: gi|86477543|gb|CI120176.1|CI120176
genomic: GAGAAGAGGAGAAGTGGCTTGTATATGATAACTCACTCAGGGAAGTCAAGgcaagtttga ... ctccatgcagGAATTTGATTCATGGGAGAAAGTGCTTGAAGAATACAGTCGTTCCAGTTTC
EST: GAGAAGAGGAGAAGTGGCTTGTATATGATAACTCACTCAGGGAAGTCAAG GAATTTGATTCATGGGAGAAAGTGCTTGAAGAATACAGTCGTTCCAGCTTCEST: gi|86480401|gb|CI123034.1|CI123034
genomic: GAGAAGAGGAGAAGTGGCTTGTATATGATAACTCACTCAGGGAAGTCAAGgcaagtttga ... ctccatgcagGAATTTGATTCATGGGAGAAAGTGCTTGAAGAATACAGTCGTTCCAGTTTC
EST: GAGAAGAGGAGAAGTGGCTTGTATATGATAACTCACTCAGGGAAGTCAAG GAATTTGATTCATGGGAGAAAGTGCTTGAAGAATACAGTCGTTCCAGTTTC
genomic: GAGAAGAGGAGAAGTGGCTTGTATATGATAACTCACTCAGGGAAGTCAAGgcaagtttga ... ctccatgcagGAATTTGATTCATGGGAGAAAGTGCTTGAAGAATACAGTCGTTCCAGTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTTCGTGCTGAGGGGCGAGATATCTGCCTTGCTCGAGAAGAGGAGAAGTGGCTTGTATATGATAACTCACTCAGGGAAGTCAAGgcaagtttgactcgcatttatcctgcattttcttttggccttttgccagataaccccttttcatgacgagactttctccatgcag
- - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - AGAAGT