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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCTTGATGGTACTACAGACATCACAAGAACTGTACATTTTGGCAAACCATCTGAGCATGAAAAGTCATGCTACACAGCTgtaagttctgtttcaccacttgctaaaattttcttttatttagaactaatcgtatgtcacatactaagttctatttggaattaaggaccatacttgtggt...

Basic information

species Oryza sativa
transcript LOC_Os11g33340.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g33340.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G169095_T01 (Zea mays), 5'ss of exon 11
TATCTTGATGGTACTACAGACATCACAAGAACTGTACATTTTGGCAAACCATCTGAGCATGAAAAGTCATGCTACACAGCTgtaagttctgtttcaccacttgctaaaattttcttttatttagaactaatcgtatgtcacatactaagttctatttggaattaaggaccatacttgtggt----------
|| || |||||||| |||||||| |||||||||||||||||||| ||||| || |  ||||| ||||||||||||||||| |||||| ||     |||  |||  ||   ||||| |    |    || |    |   || |||   ||||  ||||   | | |  ||  || ||||  |          
TACCTGGATGGTACAACAGACATTACAAGAACTGTACATTTTGGTAAACCCTCAGCACATGAGAAGTCATGCTACACAGCAgtaagtgct-----accttttgagaagtatttctctcccatc---cttacttcagcccatatat--agtttcatttaccagttaccacagtaattgtaatcattctttca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218487565|gb|FG947568.1|FG947568
EST:     CTGTACATTTTGGCAAACCATCTGAGCATGAAAAGTCATGCTACACGGCT                         GTGTTGAAAGGCCACATTGCACTAGACACTGCTGTATTTCCTAATGGAACC
genomic: CTGTACATTTTGGCAAACCATCTGAGCATGAAAAGTCATGCTACACAGCTgtaagttctg ... ttggaaatagGTGTTGAAAGGCCACATTGCACTAGACACTGCTGTATTTCCTAATGGAACC