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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACGTGGAATGCAATCTACCATGTTTGTTGAAATGGCACCTGGAGTGACTGCCGGTGATTTGTACCAGCATCTCAAGTCTACTTATGAGgtttgtttgtctgaccagtggctaaattatctgtctgactatttgaatacagacgttttctactgaaatgaattcatcaaaatgttttgagattatgtaatgttgtgagtgagagcatctcctcttgttagcatcacaattttatctacctgtatcttccccag

Basic information

species Oryza sativa
transcript LOC_Os10g35170.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g35170.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G038848_T02 (Zea mays), 5'ss of exon 12
AAACGTGGAATGCAATCTACCATGTTTGTTGAAATGGCACCTGGAGTGACTGCCGGTGATTTGTACCAGCATCTCAAGTCTACTTATGAGgtttgtttgtctgacca-gt-ggctaaattatctgtctgactatttgaatacagacgttttctactgaaatgaattcatcaaaatgttttgagattatgtaatgttgtgagtgagagcatctcctcttgttagcatcacaattttatctac-ctgtatcttccccag
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AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACTCCCAGGGATTTGTATGAACACCTAAAGTCTACTTACGAGgtttgtttacctaaccatgtaggctaaattat------gacaactt-aggaaggaccatcattttttcactgaagtcatcaatctgtcgtgtgtttttgaagtgt-----gtagagaattatactcttgttagc-tcagagttcattcgtcattgtatcttttcag-