1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCCATATATGTCCTCCACCCAACGTTGGGTTTGAGAACAGCTATTCTGGCAATGCAGATGTTTGTTGATGGAGAGgtattacctagctcaacccatactgatatcatcttttatgtttcatcagtatctgtattgagatgtagcattatcttttattaattaaaaaactag
species | Oryza sativa |
transcript | LOC_Os10g30750.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGGGTTTGAGAACAGCTATTCTGGCAATGCAGATGTTTGTTGATGGAGAG GTTTGGAAGAAAGTTGTCTACGTGGATAGGCTTGTGCATCTGTTCAGATATEST: gi|25803039|gb|CA759000.1|CA759000
genomic: TGGGTTTGAGAACAGCTATTCTGGCAATGCAGATGTTTGTTGATGGAGAGgtattaccta ... aaaaaactagGTTTGGAAGAAAGTTGTCTACGTGGATAGGCTTGTGCATCTGTTCAGATAT
EST: TGGGTTTGAGAACAGCTATTCTGGCAATGCAGATGTTTGTTGATGGAGAG GTTTGGATGAAAGTNGTCTACGTGGATAGGCTTGTGCATCTGTTCAGATATEST: gi|86828186|gb|CI276799.1|CI276799
genomic: TGGGTTTGAGAACAGCTATTCTGGCAATGCAGATGTTTGTTGATGGAGAGgtattaccta ... aaaaaactagGTTTGGAAGAAAGTTGTCTACGTGGATAGGCTTGTGCATCTGTTCAGATAT
EST: TGGGTTTGAGAACAGCTATTCTGGCAATGCAGATGTTTGTTGATGGAGAG GTTTGGAAGAAAGTTGTCTACGTGGATAGGCTTGTGCATCTGTTCAGATATEST: gi|86603018|gb|CI357382.1|CI357382
genomic: TGGGTTTGAGAACAGCTATTCTGGCAATGCAGATGTTTGTTGATGGAGAGgtattaccta ... aaaaaactagGTTTGGAAGAAAGTTGTCTACGTGGATAGGCTTGTGCATCTGTTCAGATAT
EST: TTTGAGAACACCTATTCTGCCAATGCAGATGTTTTTTGATGGAGAG GTTTGGAAGAAAGTTGTCTACGTGGATAGGCTTGTGCATCTGTTCAGATAT
genomic: TTTGAGAACAGCTATTCTGGCAATGCAGATGTTTGTTGATGGAGAGgtattaccta ... aaaaaactagGTTTGGAAGAAAGTTGTCTACGTGGATAGGCTTGTGCATCTGTTCAGATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCATATATGTCCTCCACCCAACGTTGGGTTTGAGAACAGCTATTCTGGCAATGCAGATGTTTGTTGATGGAGAGgtattacctagctcaacccatactgatatcatcttttatgtttcatcagtatctgtattgagatgtagcattatcttttattaattaaaaaactag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA