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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAGACACGGCCCTTCCTTCTCCTGAATGGTCTTCGGATCATATAGCACTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcataagggcataaccacattttaattatactgtaggactgcggtgctctgattttgctagtgcaaacagcacatggctcaagtaagatttggtg...

Basic information

species Oryza sativa
transcript LOC_Os10g27230.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g27230.3 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G118467_T01 (Zea mays), 5'ss of exon 11
GAAAAGACACGGCCCTTCCTTCTCCTGAATGGTCTTCGGATCATATAGCACTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcataagggca--taaccacattttaattatactgtaggactgcggtgctctgattttgctagtgcaaacagcacatggctcaagtaagatttggtg
|||||||||| || || || || ||||||||||| || ||||| ||||||||||| || || |||||||||||||| ||||||||||| |||||| |||||||||| | || || |   |      |  || |  | || | | |      || | |  ||||| |      ||       ||| |   || ||| |   | 
GAAAAGACACAGCTCTCCCATCCCCTGAATGGTCATCAGATCACATAGCACTCTTAGCTGAGTTCCGGTGCAAGCCAAGAATCAGACGTTGACACATTAGgtatgttacaaaggaaatcagtgttgtcatattgcttctattgcaactgaatgttgtttttttgttgacatgaatgatgt-tggattgtgttagagtaaat-

upper sequence: LOC_Os10g27230.3 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G043509_T01 (Zea mays), 5'ss of exon 11
GAAAAGACACGGCCCTTCCTTCTCCTGAATGGTCTTCGGATCATATAGCACTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata-agggcataaccacattttaattatactgtaggactgcggtgctctgattttgctagtgcaaacagcacatggctcaagtaagatttggtg
|||||||||| || ||||| ||||||| |||||| || ||||| |||||||| || || || |||||||||||||||||||||||| | |||||| |||||||||| | | |||  || |   |  |   |||      ||      | |     |  ||||| |      ||  |     |  |  |    ||||   | 
GAAAAGACACAGCTCTTCCATCTCCTGGATGGTCATCAGATCACATAGCACTGTTAGCCGAGTTCCGGTGCAAGCCTAGAATCAGAAGTTGACACATTAGgtatgttacacaggaaatcagtgccgtcatattgcttcttactggaactgcatgttt-ttttgttgacatgaatggtgttggattttaccgtgattgtata

upper sequence: LOC_Os10g27230.3 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA03G36550.1 (Glycine max), 5'ss of exon 11
GAAAAGACACGGCCCTTCCTTCTCCTGAATGGTCTTCGGATCATATAGCACTCTTGGCAGAATTCCGGTGC---AAGCCTAGAATCAGACGGTGACACCTTAGgtat-gtcataagggcataaccacatt-ttaattatactgtaggactgcggtgctctgattttgctagtgcaaacagcacatggctcaagtaagatttggtg
   ||||||| || |||||||||||||||||||| || |||||||||||  | || || || ||||| |||   |||  ||||   || || ||||   | |||||   ||||    |      | | |  | ||||||  | ||  | |    |  | || || || | |||            | |||     |  ||   | 
---AAGACACAGCACTTCCTTCTCCTGAATGGTCCTCTGATCATATAGCTATGTTAGCTGAGTTCCGCTGCTGCAAGAATAGATCTAGGCGTTGACTTATAAGgtaccatcatgtctgtcctttcccttgatcaattattatttaatattcttattttatgcttgtgtt-gtgtgttagatcagcgactccttgcattttcatt-

upper sequence: LOC_Os10g27230.3 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA19G39210.3 (Glycine max), 5'ss of exon 11
GAAAAGACACGGCCCTTCCTTCTCCTGAATGGTCTTCGGATCATATAGCACTCTTGGCAGAATTCCGGTGC---AAGCCTAGAATCAGACGGTGACACCTTAGgtat-gtcataagggcataaccacatt-ttaattat-actgtaggactgcggtgctc---tgattttgctagtgcaaacagcacatggctcaagtaagatttggtg
   ||||||| || |||||||||||||||||||| || ||||||||||| || || || || ||||| |||   |||  ||||   || || |||| | | |||||   ||||    |      | | || | |||||| | | || |  |    ||      || || |  |  |    | ||  || |||||   |   ||||    
---AAGACACAGCACTTCCTTCTCCTGAATGGTCCTCTGATCATATAGCTCTGTTAGCTGAGTTCCGCTGCTGCAAGAATAGATCTAGGCGCTGACTCATAAGgtaccatcatctctgtcctttccctttatcaattattattttatgcttaatttgtgtgagtggttattgttttatggaaagatcaaggctc--ttggcattt----

upper sequence: LOC_Os10g27230.3 (Oryza sativa), 5'ss of exon 12
lower sequence: Vv08s0007g07020.t01 (Vitis vinifera), 5'ss of exon 11
GAAAAGACACGGCCCTTCCTTCTCCTGAATGGTCTTCGGATCATATAGCACTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcataa-----gggcataaccacattttaattatactgtaggactgcggtgctctgattttgctagtgcaaacagcacatggctcaagtaagatttggtg
|||||||||| || ||||||||||| || ||||| || |||||||| || ||  |||| ||||| || |||||||||||||  ||||| |||||    |||||   ||  |     |    || ||| ||   |   ||  | | ||    | |     | || |||||  |  ||   |   |   |||| |    ||||  | 
GAAAAGACACAGCACTTCCTTCTCCGGAGTGGTCCTCTGATCATATTGCCCTTCTGGCTGAATTTCGTTGCAAGCCTAGAACTAGACGTTGACATTCCAGgtagaccaatatttttgcttttatccaaatacaaggaatttttttggttgacagc---ttcatcttgctgttaaaacttgggga--actcatggtgtattttttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89195904|gb|CI007323.1|CI007323
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88282956|gb|CI404204.1|CI404204
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|86251336|gb|CI055469.1|CI055469
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88510641|gb|CI438147.1|CI438147
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88413586|gb|CI526148.1|CI526148
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|29613589|gb|CB618602.1|CB618602
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGACGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88836259|gb|CI371364.1|CI371364
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         TTCGCGAATAGATGGTTAACTTCTGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|86877680|gb|CI312913.1|CI312913
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|86537140|gb|CI177346.1|CI177346
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|29627416|gb|CB632427.1|CB632427
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGACGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88447964|gb|CI538967.1|CI538967
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATNCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88255136|gb|CI353960.1|CI353960
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88506490|gb|CI433996.1|CI433996
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88468436|gb|CI514918.1|CI514918
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|89178928|gb|CI391926.1|CI391926
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88983097|gb|CI020661.1|CI020661
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88320509|gb|CI523252.1|CI523252
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|89180086|gb|CI044365.1|CI044365
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88219644|gb|CI219204.1|CI219204
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88374432|gb|CI515916.1|CI515916
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|4716458|gb|AU057574.1|AU057574
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88268411|gb|CI378346.1|CI378346
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|29676248|gb|CB672523.1|CB672523
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|29630215|gb|CB635224.1|CB635224
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGACGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88846729|gb|CI373497.1|CI373497
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|29623249|gb|CB628260.1|CB628260
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGACGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88268979|gb|CI380277.1|CI380277
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88462659|gb|CI517188.1|CI517188
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|88459026|gb|CI514307.1|CI514307
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
EST: gi|89179877|gb|CI044156.1|CI044156
EST:     CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAG                         GTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA
genomic: CTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGgtatgtcata ... ctttcttcagGTCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCA