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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGGGTTGAAGGCTCCTCCTAACCTTTTTGTGATGATGACAACACTGCTGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgttactatggtgttctcacctcattgtaaatgttcaggataacgttcataaaattgtttgtgaacaatgctataagctgagggtcaacatac...

Basic information

species Oryza sativa
transcript LOC_Os10g26140.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g26145.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G444692_T02 (Zea mays), 5'ss of exon 10
AGCTGGGTTGAAGGCTCCTCCTAACCTTTTTGTGATGATGACAACACTGCTGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgttactatggtgttctcacctcattgtaaat-gttcaggataacgttcataaaattgtttgtgaacaatgctataagctgagggtcaacatac------
 |||||| | ||||||||||  ||||||| |||||||| | | ||||| || || || |||||||||||  |||||||||| |||||||| || |||||||||||| | ||   |  || || |      | ||  | | |||| | |  || | |||    ||     |  |  | | | |    |     |  | | ||      
GGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGCGACACTACTAGCTCGTAGCAACCGTTACGCTGAAATAGCATTGTTTGTGTCAAACAAGgtcagtttattgtaactgtattttgg----actgcgatttgttctgaagtac-tccatctgtttcaaattacaagacgttttggttttt--ctagatacactgcttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86502356|gb|CI144989.1|CI144989
EST:     TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|89186084|gb|CI047953.1|CI047953
EST:     TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCNACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|86477411|gb|CI120044.1|CI120044
EST:     TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|94362431|gb|CI052426.1|CI052426
EST:     TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|89192800|gb|CI050098.1|CI050098
EST:     TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|86482162|gb|CI124795.1|CI124795
EST:     TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|86884727|gb|CI313106.1|CI313106
EST:     CAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAAC-TGCGATGCAACTCATGG-ATTAGGTCAA
genomic: CAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|86827328|gb|CI270972.1|CI270972
EST:     TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|29621826|gb|CB626837.1|CB626837
EST:     TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCGA
genomic: TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|87016317|gb|CI271728.1|CI271728
EST:     TGGCCCGCAGCAACCGTTATCCTGAAATAGCNTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|16578849|gb|BI812944.1|BI812944
EST:     TGTTTGTATCC-ACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCGA
genomic: TGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|29634117|gb|CB639126.1|CB639126
EST:     CCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: CCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|86478805|gb|CI121438.1|CI121438
EST:     TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|86431426|gb|CI085037.1|CI085037
EST:     GGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: GGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|86437670|gb|CI119590.1|CI119590
EST:     GGCCCGCAGGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: GGCCCGCA-GCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|286811|gb|D15618.1|D15618
EST:     TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|87016228|gb|CI271639.1|CI271639
EST:     TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|29630282|gb|CB635291.1|CB635291
EST:     TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCGA
genomic: TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|29669543|gb|CB665818.1|CB665818
EST:     TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|86481413|gb|CI124046.1|CI124046
EST:     CCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: CCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|89195851|gb|CI007270.1|CI007270
EST:     GCAGCAACCGTTATCCTGAAATAGCCTTGGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: GCAGCAACCGTTATCCTGAAATAGCCTT-GTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
EST: gi|86437949|gb|CI119869.1|CI119869
EST:     TGGCCCGCAGCAGCCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAG                         ATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA
genomic: TGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAACAAGgtcagtatgt ... attccttcagATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAA