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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGTGTCTACAAATGTTCGACAATGATCTTTCACTGGGCAATATCGTTGTCACATTCAACTTAGGGAAACCACAGATTGAGAACAAATGgtatgctccttgctagatccacttatgcatggaaagcttcaatattcatagatgaaatttaagattgccccttatgctaaatgtttccatggggacaaaa...

Basic information

species Oryza sativa
transcript LOC_Os10g10170.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g10170.4 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G018929_T02 (Zea mays), 5'ss of exon 7
GCTTGTGTCTACAAATGTTCGACAATGATCTTTCACTGGGCAATATCGTTGTCACATTCAACTTAGGGAAACCACAGATTGAGAACAAATGgtatgctccttgctagatccactta---tgcatggaaagcttcaatattcatagatgaaatttaagattgccccttatgc-taaatgtttccatggggacaaaa
| ||||| || ||||||||| ||| |||| |||| || || |||||  ||||||  |||| || |||||||||||||||||| ||||||||||||||| ||  |  | ||   |||    |  |   |  ||   ||||  ||| ||  |   |    ||     |||  | |   ||  | ||     | | | 
GTTTGTGCCTTCAAATGTTCAACATTGATTTTTCGCTTGGGAATATTATTGTCAACTTCAGCTCAGGGAAACCACAGATTGACAACAAATGgtatgcttctcac--ggtcatgttagaccgtcttatagtctcatatatatatatatatatactgtatttatatattacacctgggtgcattca-atatataga-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88405888|gb|CI591283.1|CI591283
EST:     AATATCGTTGTCACATTCAACTTAGGGAAAACACAGATTGAGAACAAATG                         GACCTCCTCAGCAATTAAGGTCTACCGTGAGGCAATTTCCACAGGACTATT
genomic: AATATCGTTGTCACATTCAACTTAGGGAAACCACAGATTGAGAACAAATGgtatgctcct ... ttttctgcagGACCTCCTCAGCAATTAAGGTCTACCGTGAGGCAATTTCCACAGGACTATT