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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTCCAGTGCTCCACAAAAACATAAAGTCTTCAAATGTCTTGCTTGATGCTGATCTCAACCCTCACCTCTCGGATTGCGGCCTTTCATTCTTCTATGAGgtttgcatgcagagtggctcttctttaacaattgatgaacaaagtataataattgtaagaacaatgtggtctaacggtagggaaatctctacag

Basic information

species Oryza sativa
transcript LOC_Os09g38700.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g38700.1 (Oryza sativa), 5'ss of exon 12
lower sequence: Vv09s0054g01570.t01 (Vitis vinifera), 5'ss of exon 5
ACCTCCAGTGCTCCACAAAAACATAAAGTCTTCAAATGTCTTGCTTGATGCTGATCTCAACCCTCACCTCTCGGATTGCGGCCTTTCATTCTTCTATGAGgtttgcatgcagagtggctcttctttaacaattgatgaacaaagtataataattgtaagaacaatgtggtctaacggtagggaaatctctacag---------
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TCCACCCATGGTTCACAAGAACATCAAGTCTTCTAATATCTTGCTTGATGCTGAACTCAATCCCCATCTCTCTGACTATGGGTTTGCTGCTTGTCATCAGgttattacttattctctacaatatctctttattg-taaacaaagtttctagagggcttg--ctatggcttggaatgatattggaattacttgagatacctgat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86481507|gb|CI124140.1|CI124140
EST:     GGCCTGTCATTCTTCTATGAG                         GACGCAAGTGAGAACTTGGGACCTGGGTACAGTGCTCCAGAGTGCTCAAGA
genomic: GGCCTTTCATTCTTCTATGAGgtttgcatgc ... atctctacagGACGCAAGTGAGAACTTGGGACCTGGGTACAGTGCTCCAGAGTGCTCAAGA