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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTCGCATGGCGGCAATTGATTTTATTGTTTGTGATGGAAGTGATGCTTTTGTAACTAACAACAACGGTAACATGGCCAAAATTCTTGTTGGGCGAAGgtgatgcatcagttctttccatttggatattttatttattttagttcatcgagctctaactatctactggtgctctctgcag

Basic information

species Oryza sativa
transcript LOC_Os09g37590.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g37590.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G168614_T03 (Zea mays), 5'ss of exon 7
CATCTCGCATGGCGGCAATTGATTTTATTGTTTGTGATGGAAGTGATGCTTTTGTAACTAACAACAACGGTAACATGGCCAAAATTCTTGTTGGGCGAAGgtgatgcatcagttctttccatttggatattttatttattttagttcatcgagct--ctaactatctactggtgctct----ctgcag
||||||||||||| ||||| ||||| ||||| ||||| | |||||||||||||||  |||||||||  || ||||||||||||||||| | ||||| ||||| |||||||  || |  |  ||   ||  || | |  | |||  |  |  |     |   |  ||| ||| |  |||    ||||||
CATCTCGCATGGCTGCAATCGATTTCATTGTCTGTGAGGAAAGTGATGCTTTTGTGGCTAACAACATTGGGAACATGGCCAAAATTCTGGCTGGGCAAAGgtaatgcatcttttgtaactgttcttatgcttaactgctgttaacttgttaactcaaccccccctctcctgatcatctatctctgcag

upper sequence: LOC_Os09g37590.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA04G02010.1 (Glycine max), 5'ss of exon 9
CATCTCGCATGGCGGCAATTGATTTTATTGTTTGTGATGGAAGTGATGCTTTTGTAACTAACAACAACGGTAACATGGCCAAAATTCTTGTTGGGCGAAGgtgatgcatcagttctttccat-ttggatattttatttattttagttcatcgagctctaactatctact--ggtgctctct-gcag
| ||||||||||| ||| | || || ||||||||||||| |||||||| ||||||||| || || || || || ||||| |||||  | | ||| ||||||| ||||| || ||   ||  | ||  || || | || | |       ||| |   |||| || ||     ||  || ||| | ||
CTTCTCGCATGGCTGCACTCGACTTCATTGTTTGTGATGAAAGTGATGTTTTTGTAACCAATAATAATGGAAATATGGCAAAAATATTGGCTGGACGAAGgt-atgcaccatttacatctttattttattttctgttgaatcactgatatctatacctaattagctttctgggaactttcttgtag

upper sequence: LOC_Os09g37590.1 (Oryza sativa), 5'ss of exon 12
lower sequence: Vv03s0038g03240.t01 (Vitis vinifera), 5'ss of exon 9
CATCTCGCATGGCGGCAATTGATTTTATTGTTTGTGATGGAAGTGATGCTTTTGTAACTAACAACAACGGTAACATGGCCAAAATTCTTGTTGGGCGAAGgtgatgcatcagttctttc-catttggatattttatttattttagttcatcgag----ctctaactatctact-ggtgctctctgcag------------
| ||||| ||||| ||  | || || ||||||||||||| |||||||| |||||| || |||||||| || |||||||| | |||  | | ||| |||||||     ||   || |||| | | ||   |    | |||      |     ||      | |||   ||| ||   | | |  |                
CTTCTCGTATGGCTGCCCTAGACTTCATTGTTTGTGATGAAAGTGATGTTTTTGTCACCAACAACAATGGCAACATGGCTAGAATGTTGGCTGGACGAAGgtatgtgattttttatttcacgtctgtggaagcaaattacaaggatgtgaggaaaaacttttaatactctccttaatacccattaacccatctacaatga

upper sequence: LOC_Os09g37590.1 (Oryza sativa), 5'ss of exon 12
lower sequence: Vv18s0001g00100.t01 (Vitis vinifera), 5'ss of exon 9
CATCTCGCATGGCGGCAATTGATTTTATTGTTTGTGATGGAAGTGATGCTTTTGTAACTAACAACAACGGTAACATGGCCAAAATTCTTGTTGGGCGAAGgtgatgcatcagttctttcc---atttggatattttatttattttagttcatcgagctctaactatctac------tggtgc-tctctgcag-----
|  |||||||||| ||| |||| || || |||||||||| ||||||||  ||||| || |||||||| || |||||||| |||||  | | |||||||||||      |   || | | |     ||| |  ||  |  | | | |    |  ||  || ||||   ||       ||     ||||| ||      
CTGCTCGCATGGCTGCACTTGACTTCATAGTTTGTGATGAAAGTGATGTATTTGTTACCAACAACAATGGAAACATGGCTAAAATATTAGCTGGGCGAAGgtatgctgttttttttgttctgtgcttgcaccttcaacct-tgtcaaggaacagaattcaaactgcttatgaactttgacatgtctcttcattgcag