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AGATATTTACACCAGCAAGCTTGAGAATTTTTTGTCATATGCCCCTGAATCATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAGgtagcttatatttcctcccatatgtggtatttatatccacctgattagtttcaaactttcaataacgggtactcttatgattattttatttggttatttt...
species | Oryza sativa |
transcript | LOC_Os09g25640.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CTCATGACATAAAGATAATGCCACATAATGCGAAG GTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGATEST: gi|86487840|gb|CI130473.1|CI130473
genomic: CTCATGACATAAAGATAATGCCACATAATGCGAAGgtagcttata ... catgttatagGTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGAT
EST: CATGACATAAAGATAATGCCACATAATGCGAAG GTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGATEST: gi|86433727|gb|CI094070.1|CI094070
genomic: CATGACATAAAGATAATGCCACATAATGCGAAGgtagcttata ... catgttatagGTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGAT
EST: GCCACATAATGCGAAG GTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGATEST: gi|86415775|gb|CI029786.1|CI029786
genomic: GCCACATAATGCGAAGgtagcttata ... catgttatagGTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGAT
EST: CATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAG GTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGATEST: gi|89169440|gb|CI109799.1|CI109799
genomic: CATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAGgtagcttata ... catgttatagGTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGAT
EST: CATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAG GTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGATEST: gi|86828176|gb|CI276792.1|CI276792
genomic: CATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAGgtagcttata ... catgttatagGTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGAT
EST: CATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAG GTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGATEST: gi|29667570|gb|CB663845.1|CB663845
genomic: CATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAGgtagcttata ... catgttatagGTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGAT
EST: CATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAG GTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGATEST: gi|33679123|gb|CF307362.1|CF307362
genomic: CATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAGgtagcttata ... catgttatagGTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGAT
EST: CATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAG GTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGATEST: gi|86900273|gb|CI296316.1|CI296316
genomic: CATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAGgtagcttata ... catgttatagGTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGAT
EST: CATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAG GTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGATEST: gi|88991369|gb|CI034704.1|CI034704
genomic: CATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAGgtagcttata ... catgttatagGTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGAT
EST: CATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAG GTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGATEST: gi|86502347|gb|CI144980.1|CI144980
genomic: CATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAGgtagcttata ... catgttatagGTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGAT
EST: CATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAG GTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGAT
genomic: CATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAGgtagcttata ... catgttatagGTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATATTTACACCAGCAAGCTTGAGAATTTTTTGTCATATGCCCCTGAATCATGGCTCCATCCACCTCATGACATAAAGATAATGCCACATAATGCGAAGgtagcttatatttcctcccatatgtggtatttatatccacctgattagtttcaaactttcaataacgggtactcttatgattattttatttggttatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctcc