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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATTCGGTGCACTATTTGCCTCCATTCCATTCCCAATATTTGCGGCTATATACTGCGTAATGTTTGGCATTGTCGgtaagcagcccaaacatacatgacaaaatgattttttttcgctttttaaatgtatttaatggacagtacactcattttattgtgtcttcag

Basic information

species Oryza sativa
transcript LOC_Os09g15170.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g15170.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G100484_T03 (Zea mays), 5'ss of exon 11
GAAAATTCGGTGCACTATTTGCCTCCATTCCATTCCCAATATTTGCGGCTATATACTGCGTAATGTTTGGCATTGTCGgtaagcagcccaaacat-acatgaca-aaatgattttttttcgctttttaa-atgtatttaa-tggacagtacactcattttattgtgtcttcag
||||||| || ||||| |||||||||||||| ||| ||||||| || || || |||||||| |||||||| ||||||||||||||  |||| ||| | |  ||| ||||    |||| | ||  | |   ||   || || || | ||   | |  |    |  ||| |||||
GAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCATTTACTGCGTTATGTTTGGAATTGTCGgtaagca--ccaagcatcatagtacacaaattgccttttctagcaatgtgttatactttaaactgtagagctaattgctacggtcatgtgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58602093|gb|CK012621.1|CK012621
EST:     TCCATTCCCAATATTTGCGGCTATATACTGCGTAATGTTTGGCATTGTCG                         CTGCTGTGGGACTATCCTTTTTGCAATTCACCAACATGAACTCAATGCGCA
genomic: TCCATTCCCAATATTTGCGGCTATATACTGCGTAATGTTTGGCATTGTCGgtaagcagcc ... gtgtcttcagCTGCTGTGGGACTATCCTTTTTGCAATTCACCAACATGAACTCAATGCGCA
EST: gi|112785328|gb|EE590478.1|EE590478
EST:     TCCATTCCCAATATTTGCGGCTATATACTGCGTAATGTTTGGCATTGTCG                         CTGCTGTGGGACTATCCTTTTTGCAATTCACCAACATGAACTCAATGCGCA
genomic: TCCATTCCCAATATTTGCGGCTATATACTGCGTAATGTTTGGCATTGTCGgtaagcagcc ... gtgtcttcagCTGCTGTGGGACTATCCTTTTTGCAATTCACCAACATGAACTCAATGCGCA