1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTCCATTGGGAAGTCGAGCAGCCAAAGCTATTGGTTTCATCGAGAAGATGATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAGgtcgaaattaacttctttcagtttgcctctattgggatgcctatttatgcaccaaaggtcacttataaagctttatttatatgttcaacag
species | Oryza sativa |
transcript | LOC_Os09g10600.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAG ATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAAEST: gi|88840316|gb|CI079770.1|CI079770
genomic: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAGgtcgaaatta ... tgttcaacagATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAA
EST: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAG ATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAAEST: gi|33693872|gb|CF322111.1|CF322111
genomic: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAGgtcgaaatta ... tgttcaacagATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAA
EST: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAG ATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAAEST: gi|86538458|gb|CI178664.1|CI178664
genomic: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAGgtcgaaatta ... tgttcaacagATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAA
EST: CGCACCACTGCAGAAGGAGCTCTTGGCAG ATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAAEST: gi|29640102|gb|CB645111.1|CB645111
genomic: CGCACCACTGCAGAAGGAGCTCTTGGCAGgtcgaaatta ... tgttcaacagATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAA
EST: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAG ATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAAEST: gi|87027842|gb|CI276198.1|CI276198
genomic: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAGgtcgaaatta ... tgttcaacagATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAA
EST: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAG ATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAAEST: gi|58669339|gb|CK058025.1|CK058025
genomic: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAGgtcgaaatta ... tgttcaacagATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAA
EST: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAG ATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAAEST: gi|88962699|gb|CI023799.1|CI023799
genomic: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAGgtcgaaatta ... tgttcaacagATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAA
EST: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAG ATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAAEST: gi|88260877|gb|CI361465.1|CI361465
genomic: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAGgtcgaaatta ... tgttcaacagATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAA
EST: CGCACCACTGCAGAAGGAGCTCTTGGCAG ATGAAGTGGGGAACACAGCAAGCATTCTTAGCATCGCCCTTGACATCTGCAEST: gi|29670467|gb|CB666742.1|CB666742
genomic: CGCACCACTGCAGAAGGAGCTCTTGGCAGgtcgaaatta ... tgttcaacagATGAAGTGGGGAACACAGC-AGCATTCTTAGCATCGCCGTTGGCATCTGCA
EST: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAG ATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAAEST: gi|218501539|gb|FG956143.1|FG956143
genomic: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAGgtcgaaatta ... tgttcaacagATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAA
EST: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAG ATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAAEST: gi|88902832|gb|CI088370.1|CI088370
genomic: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAGgtcgaaatta ... tgttcaacagATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAA
EST: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAG ATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAA
genomic: GATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAGgtcgaaatta ... tgttcaacagATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCATTGGGAAGTCGAGCAGCCAAAGCTATTGGTTTCATCGAGAAGATGATAGAGTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAGgtcgaaattaacttctttcagtttgcctctattgggatgcctatttatgcaccaaaggtcacttataaagctttatttatatgttcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT