Skip to another splice site:
1
5'  3'    2
5'  3'    3
5'  3'    4
5'  3'    5
5'  3'    6
5'  3'    7
5'  3'    8
5'  3'    9
5'  3'    10
5'  3'    11
5'  3'    12
5'  3'

Data associated with selected splice site

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgcagtattttttttgccttgattcctttcttcgtaatgctataggacatttacaggttattggggtatattatgaatacttactttgtaggttgtggagaag

Basic information

species	Oryza sativa
transcript	LOC_Os09g07510.3
intron #	12
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: LOC_Os09g07510.3 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G102858_T01 (Zea mays), 5'ss of exon 12

AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgcagtattttttttgccttgattcctttcttcgtaatgctataggacatttacaggttattggggtatatta--tgaatacttactttgtaggttgtggagaag
 || || ||||| |||||||||||||| || || |||||  ||||| |||| |||||||| |||||||| ||||| |||       |   ||   || ||    || || |  |||   | ||||   || | || |  ||    |  ||||| | || |||| ||            
GGTTCCGAACATGAAATTCAATGTTGCTAAAGTCCTGCAATCACTTGTACCAATCCTTGACCAATCTgtaagttgtagt-----catcaactctgttgctgcgatcctatttttatca-atattt---ggctttttgcctaccccaattgaatgcgta-tttgcag------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|87041566|gb|CI196188.1|CI196188

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|58693179|gb|CK081866.1|CK081866

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|58693179|gb|CK081866.1|CK081866

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|58693179|gb|CK081866.1|CK081866

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|58693179|gb|CK081866.1|CK081866

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|58693179|gb|CK081866.1|CK081866

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|58693179|gb|CK081866.1|CK081866

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|58693179|gb|CK081866.1|CK081866

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|58693179|gb|CK081866.1|CK081866

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|86487397|gb|CI130030.1|CI130030

EST:     TCAATGTTGCGAAGGTCCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|88840225|gb|CI079679.1|CI079679

EST:     TTAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|29667131|gb|CB663406.1|CB663406

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         G
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaag-

EST: gi|29667131|gb|CB663406.1|CB663406

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         G
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaag-

EST: gi|29667131|gb|CB663406.1|CB663406

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         G
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaag-

EST: gi|29667131|gb|CB663406.1|CB663406

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         G
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaag-

EST: gi|29667131|gb|CB663406.1|CB663406

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         G
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaag-

EST: gi|29667131|gb|CB663406.1|CB663406

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         G
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaag-

EST: gi|29667131|gb|CB663406.1|CB663406

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         G
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaag-

EST: gi|29667131|gb|CB663406.1|CB663406

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         G
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaag-

EST: gi|29658916|gb|CB655191.1|CB655191

EST:     TCAATATTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         G
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaag-

EST: gi|29658916|gb|CB655191.1|CB655191

EST:     TCAATATTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         G
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaag-

EST: gi|29658916|gb|CB655191.1|CB655191

EST:     TCAATATTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         G
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaag-

EST: gi|29658916|gb|CB655191.1|CB655191

EST:     TCAATATTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         G
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaag-

EST: gi|29658916|gb|CB655191.1|CB655191

EST:     TCAATATTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         G
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaag-

EST: gi|29658916|gb|CB655191.1|CB655191

EST:     TCAATATTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         G
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaag-

EST: gi|29658916|gb|CB655191.1|CB655191

EST:     TCAATATTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         G
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaag-

EST: gi|29658916|gb|CB655191.1|CB655191

EST:     TCAATATTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         G
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaag-

EST: gi|88962171|gb|CI097324.1|CI097324

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|87038212|gb|CI192834.1|CI192834

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|87037905|gb|CI192527.1|CI192527

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGANCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|58598388|gb|CK008916.1|CK008916

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|87036423|gb|CI191045.1|CI191045

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|87041468|gb|CI196090.1|CI196090

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|86826481|gb|CI364112.1|CI364112

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|33654810|gb|CF277424.1|CF277424

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|88967779|gb|CI098021.1|CI098021

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|29642127|gb|CB647134.1|CB647134

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|29642127|gb|CB647134.1|CB647134

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|29642127|gb|CB647134.1|CB647134

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|29642127|gb|CB647134.1|CB647134

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|29642127|gb|CB647134.1|CB647134

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|29642127|gb|CB647134.1|CB647134

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|29642127|gb|CB647134.1|CB647134

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|29642127|gb|CB647134.1|CB647134

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|29641703|gb|CB646710.1|CB646710

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|29641703|gb|CB646710.1|CB646710

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|29641703|gb|CB646710.1|CB646710

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|29641703|gb|CB646710.1|CB646710

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|29641703|gb|CB646710.1|CB646710

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|29641703|gb|CB646710.1|CB646710

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|29641703|gb|CB646710.1|CB646710

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|29641703|gb|CB646710.1|CB646710

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTGTTGT                     
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATC-----Tgtgagttgca ... tgtgga

EST: gi|42592112|gb|CK738598.1|CK738598

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|29631456|gb|CB636465.1|CB636465

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|89181442|gb|CI112948.1|CI112948

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|88250842|gb|CI248693.1|CI248693

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|89163971|gb|CI101059.1|CI101059

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|22307172|gb|BQ908394.1|BQ908394

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|89193364|gb|CI050662.1|CI050662

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|87041657|gb|CI196279.1|CI196279

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|89193243|gb|CI050541.1|CI050541

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|86481308|gb|CI123941.1|CI123941

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|86903252|gb|CI313615.1|CI313615

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|7134620|gb|AU082588.1|AU082588

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACNCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|86497016|gb|CI139649.1|CI139649

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|88849706|gb|CI089812.1|CI089812

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGCGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|86487405|gb|CI130038.1|CI130038

EST:     TCAATGTTGCGAAGGTCCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|88837381|gb|CI078741.1|CI078741

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|87028909|gb|CI351212.1|CI351212

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|89183582|gb|CI046147.1|CI046147

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|58663458|gb|CK052144.1|CK052144

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|89175570|gb|CI042591.1|CI042591

EST:     TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: TCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

EST: gi|88270020|gb|CI381318.1|CI381318

EST:     GCAGGCACTTATACCGATCCTTGATCAATCT                         AACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA
genomic: GCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 1 RNA-Seqlibrary.

Block sizes: 75 (upstream exon), 55 (downstream exon)
Score: 20

AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgca ... tgtggagaagAACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTAAGATACTATGCAAACCAGGCCCTTCAGGCATGCGATCAAATCATGATGT

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Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTGCCAAACATCAAATTCAATGTTGCGAAGGTTCTGCAGGCACTTATACCGATCCTTGATCAATCTgtgagttgcagtattttttttgccttgattcctttcttcgtaatgctataggacatttacaggttattggggtatattatgaatacttactttgtaggttgtggagaag

- - - - - - - - - - - - - - - - - CTGCAG