1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAGTGTGCCCTGCTGACCGATGGCAGATTTTCTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgttgtagtactctagcattggttacacattaacctataaaatgtaacattctgctagttctttttcctgcggcctttcaaatggttcttcctcatgacgctgccagctaggggaaagataaccgcagcaaagattgttttggttggtgttgtttacaatgtgaatatttttcag
species | Oryza sativa |
transcript | LOC_Os08g44530.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAG GAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGATEST: gi|58586955|gb|CF985263.1|CF985263
genomic: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgtt ... tatttttcagGAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGAT
EST: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAG GAGGGAGGGTC-AATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGAEST: gi|88830002|gb|CI074674.1|CI074674
genomic: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgtt ... tatttttcagGAGGGAGG-TCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGA
EST: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAG GAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGATEST: gi|8858265|gb|AU095583.1|AU095583
genomic: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgtt ... tatttttcagGAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGAT
EST: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAG GAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGATEST: gi|86255894|gb|CI068343.1|CI068343
genomic: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgtt ... tatttttcagGAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGAT
EST: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAG GAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGATEST: gi|88965683|gb|CI006589.1|CI006589
genomic: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgtt ... tatttttcagGAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGAT
EST: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAG GAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGATEST: gi|218478481|gb|FG953986.1|FG953986
genomic: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgtt ... tatttttcagGAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGAT
EST: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAG GAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGATEST: gi|88971557|gb|CI017871.1|CI017871
genomic: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgtt ... tatttttcagGAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGAT
EST: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAG GAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGATEST: gi|86823618|gb|CI258691.1|CI258691
genomic: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgtt ... tatttttcagGAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGAT
EST: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAG GAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGATEST: gi|86428510|gb|CI075191.1|CI075191
genomic: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgtt ... tatttttcagGAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGAT
EST: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAG GAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGATEST: gi|86537187|gb|CI177393.1|CI177393
genomic: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgtt ... tatttttcagGAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGAT
EST: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAG GAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGATEST: gi|89180557|gb|CI044836.1|CI044836
genomic: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgtt ... tatttttcagGAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGAT
EST: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAG GAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGATEST: gi|88848058|gb|CI086580.1|CI086580
genomic: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgtt ... tatttttcagGAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGAT
EST: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAG GAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGATEST: gi|88960472|gb|CI006433.1|CI006433
genomic: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgtt ... tatttttcagGAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGAT
EST: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAG GAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGATEST: gi|5038803|gb|AU070913.1|AU070913
genomic: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgtt ... tatttttcagGAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGAT
EST: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAG GAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGATEST: gi|86488131|gb|CI130764.1|CI130764
genomic: CTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgtt ... tatttttcagGAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGAT
EST: GGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCCTGAAGCCACAG GAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGA
genomic: GGAGGATCACATGGATTTGTTGTAGGCCACATTTGT-CCTGAAG-CACAGgtattgtgtt ... tatttttcagGAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGTGCCCTGCTGACCGATGGCAGATTTTCTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGTCCTGAAGCACAGgtattgtgttgtagtactctagcattggttacacattaacctataaaatgtaacattctgctagttctttttcctgcggcctttcaaatggttcttcctcatgacgctgccagctaggggaaagataaccgcagcaaagattgttttggttggtgttgtttacaatgtgaatatttttcag
- - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC