1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CGCAGAACAAGAAACTCTCACCAGTGACATCAGTTGTCTCACCAAGTTGAAGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAGgtaatcatgtcaagaactgacctatgagctctttttattttttggcagtattttccttaaggagtcggtaaatactatttcctatagtacttcaatacta...
species | Oryza sativa |
transcript | LOC_Os08g43400.3 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAG CEST: gi|33793306|gb|CF322532.1|CF322532
genomic: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAGgtaatcatgt ... tgtgcagcag-
EST: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAG CEST: gi|33793306|gb|CF322532.1|CF322532
genomic: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAGgtaatcatgt ... tgtgcagcag-
EST: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAG CEST: gi|33793306|gb|CF322532.1|CF322532
genomic: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAGgtaatcatgt ... tgtgcagcag-
EST: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAG CEST: gi|29657638|gb|CB653913.1|CB653913
genomic: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAGgtaatcatgt ... tgtgcagcag-
EST: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAG CEST: gi|29657638|gb|CB653913.1|CB653913
genomic: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAGgtaatcatgt ... tgtgcagcag-
EST: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAG CEST: gi|29657638|gb|CB653913.1|CB653913
genomic: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAGgtaatcatgt ... tgtgcagcag-
EST: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAG CEST: gi|29657638|gb|CB653913.1|CB653913
genomic: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAGgtaatcatgt ... tgtgcagcag-
EST: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAG CEST: gi|313083968|gb|HO213751.1|HO213751
genomic: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAGgtaatcatgt ... tgtgcagcag-
EST: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAGCAG
genomic: AGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGAT---CAGgtaatcatgt ... tgtgcagc
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCAGAACAAGAAACTCTCACCAGTGACATCAGTTGTCTCACCAAGTTGAAGAAGACTGATAGTGACCATGAGGATGAACTTGATGAGTATCAGGATCAGgtaatcatgtcaagaactgacctatgagctctttttattttttggcagtattttccttaaggagtcggtaaatactatttcctatagtacttcaatacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG