1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ACCAAAGGAGCCTTCCCTTCTAGATGAGAGATCCCTTCTGGCTTGCATTGTACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACTgtgagttatacatgcatgcttatgattgagttcctgactagtgggaactgtatatattgttgtctaatggaacatttactgactcatgtgcaaatttttttttcag
species | Oryza sativa |
transcript | LOC_Os08g43060.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACT CTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTATEST: gi|29644584|gb|CB649591.1|CB649591
genomic: TACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACTgtgagttata ... tttttttcagCTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTAT
EST: TACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACT CTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTATEST: gi|58682206|gb|CK070893.1|CK070893
genomic: TACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACTgtgagttata ... tttttttcagCTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTAT
EST: TACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACT CTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTATEST: gi|66913811|gb|CX100659.1|CX100659
genomic: TACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACTgtgagttata ... tttttttcagCTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTAT
EST: TACGTGCAGTTCCTGCTGGAACTGATGGCCGAATCAAGATTAGCACAAAT CTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTATEST: gi|38482621|gb|CF966575.1|CF966575
genomic: TACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACTgtgagttata ... tttttttcagCTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTAT
EST: TACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACT CTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTATEST: gi|29638766|gb|CB643775.1|CB643775
genomic: TACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACTgtgagttata ... tttttttcagCTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTAT
EST: TACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACT CTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTATEST: gi|86829541|gb|CI286736.1|CI286736
genomic: TACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACTgtgagttata ... tttttttcagCTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTAT
EST: TACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACT CTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTATEST: gi|58655744|gb|CK044424.1|CK044424
genomic: TACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACTgtgagttata ... tttttttcagCTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTAT
EST: ACGTGCAGTTCCTGCTGGACCTGATGGCCTGAATCAAGATTAGCACAACT CTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTAT
genomic: ACGTGCAGTTCCTGCTGGACCTGATGGCC-GAATCAAGATTAGCACAACTgtgagttata ... tttttttcagCTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCAAAGGAGCCTTCCCTTCTAGATGAGAGATCCCTTCTGGCTTGCATTGTACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACTgtgagttatacatgcatgcttatgattgagttcctgactagtgggaactgtatatattgttgtctaatggaacatttactgactcatgtgcaaatttttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA