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GACTATGGTAGAGGAGGAGCGATGCCTGATAAAACTAGTGCCCCAGAAGTAAGAGCTCAAGCTCGGCCTTTTGGAGGTAGCACAACATCATATGCAACGGgtatgtttatttatagtcttcatatgtcattttatgtaattcagcaaatctgttttttttttattctccccttacaagattctattcacctttgtaattc...
species | Oryza sativa |
transcript | LOC_Os08g25310.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AGAGCTCAAGCTCGGCCTTTTGGAAGG-AGCACAACATCATATGCAACGG GTTCCTCAAGCAACAAAGGCGGTATTTCCTCGAEST: gi|29638641|gb|CB643650.1|CB643650
genomic: AGAGCTCAAGCTCGGCCTTTTGGA-GGTAGCACAACATCATATGCAACGGgtatgtttat ... gtttgtatagGTTCCTCAAGCAACAGAGGCGGTATTTCCTCGA
EST: AAGAGCTCAAGCTCGGCCTTTTGGAGGTAGCACAACATCATATGCAACGG GTTCCTCAAGCAACAGAGGCGGT-TTTCCTCGA
genomic: AAGAGCTCAAGCTCGGCCTTTTGGAGGTAGCACAACATCATATGCAACGGgtatgtttat ... gtttgtatagGTTCCTCAAGCAACAGAGGCGGTATTTCCTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTATGGTAGAGGAGGAGCGATGCCTGATAAAACTAGTGCCCCAGAAGTAAGAGCTCAAGCTCGGCCTTTTGGAGGTAGCACAACATCATATGCAACGGgtatgtttatttatagtcttcatatgtcattttatgtaattcagcaaatctgttttttttttattctccccttacaagattctattcacctttgtaattc
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcccct