1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtacaaaatttcacttctcattctgttaactagatggaaccacatcttctgcttctaaaaatgttgttattacag
species | Oryza sativa |
transcript | LOC_Os08g08200.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAG AGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAGEST: gi|88508690|gb|CI436196.1|CI436196
genomic: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtaca ... gttattacagAGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAG
EST: AGGATGAATGGGAGGTAGCCTATCTTTACCTCGCATTTGTTTTGCGCAAG AGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAGEST: gi|86413070|gb|CI067475.1|CI067475
genomic: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtaca ... gttattacagAGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAG
EST: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAG AGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAGEST: gi|88969123|gb|CI099074.1|CI099074
genomic: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtaca ... gttattacagAGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAG
EST: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAG AGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAGEST: gi|88479292|gb|CI416563.1|CI416563
genomic: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtaca ... gttattacagAGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAG
EST: AGGATGAATNGGAGGTAGCCTATCTTTACCTCGCATTTGTTTTGCGCAAG AGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAGEST: gi|86426409|gb|CI071506.1|CI071506
genomic: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtaca ... gttattacagAGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAG
EST: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAG AGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAGEST: gi|88199436|gb|CI199286.1|CI199286
genomic: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtaca ... gttattacagAGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAG
EST: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAG AGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAGEST: gi|88542316|gb|CI471638.1|CI471638
genomic: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtaca ... gttattacagAGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAG
EST: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTNTTTTGCGCAAG AGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAGEST: gi|86428518|gb|CI075199.1|CI075199
genomic: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtaca ... gttattacagAGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAG
EST: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAG AGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAGEST: gi|86541036|gb|CI181242.1|CI181242
genomic: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtaca ... gttattacagAGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAG
EST: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAG AGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAGEST: gi|88516881|gb|CI444461.1|CI444461
genomic: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtaca ... gttattacagAGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAG
EST: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAG AGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAGEST: gi|88518293|gb|CI445947.1|CI445947
genomic: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtaca ... gttattacagAGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAG
EST: AGGATGAATGGGAGGTAGCCTATCTTTACCTCGCATTTGTTTTGCGCAAG AGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAGEST: gi|88834373|gb|CI077656.1|CI077656
genomic: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtaca ... gttattacagAGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAG
EST: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAG AGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAGEST: gi|88365714|gb|CI543195.1|CI543195
genomic: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtaca ... gttattacagAGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAG
EST: GATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAG AGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAGEST: gi|88971622|gb|CI388867.1|CI388867
genomic: GATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtaca ... gttattacagAGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAG
EST: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAG AGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAG
genomic: AGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtaca ... gttattacagAGAGGCCAACCCCCCTCCCAGCGGAGGGCCAACAATGCAAACAGAGGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGgtacagtacaaaatttcacttctcattctgttaactagatggaaccacatcttctgcttctaaaaatgttgttattacag
- - - - - - AGGATG