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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCAGCTACAAGCTGAAAGAGATCTTAGAGCTGCATTGGAGGTTGGATTAAGCATGTCTTCTGCACATATTTCTAGTTCACGTTCTATGGATTCAAAGgtactcaaatgttatgcaacttgacactgatgatcatatatactctgtgggcttattgatggaatctaatttcttctttgtgcttcccttaaag

Basic information

species Oryza sativa
transcript LOC_Os07g46450.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g46450.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G036872_T02 (Zea mays), 5'ss of exon 18
AGAGCAGCTACAAGCTGAAAGAGATCTTAGAGCTGCATTGGAGGTTGGATTAAGCATGTCTTCTGCACATATTTCTAGTTCACGTTCTATGGATTCAAAGgtactcaaatgttatgcaacttga-cactgatgatcatatatactctgtgggcttattg-atggaatctaatttcttctttgtgcttcccttaaag
|||||||||||| |||||||| ||||||||||||||| ||||||||||  |||||||||||||| ||||  ||||||| ||||  || ||||| || |||||| |  |||  || |||| |||  |  |||   |  ||  ||||   |  |||||||  |||   ||   | | |||| ||  ||||  ||| ||
AGAGCAGCTACAGGCTGAAAGGGATCTTAGAGCTGCACTGGAGGTTGGGCTAAGCATGTCTTCTTCACAATTTTCTAGCTCACTCTCCATGGACTCGAAGgtattggaattgtaagcaagttgttctttgacagt--tacgtacttgctcagcttattttatgatgtcctctgttttctatgcacttct-ttatag

upper sequence: LOC_Os07g46450.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G340359_T01 (Zea mays), 5'ss of exon 18
AGAGCAGCTACAAGCTGAAAGAGATCTTAGAGCTGCATTGGAGGTTGGATTAAGCATGTCTTCTGCACATATTTCTAGTTCACGTTCTATGGATTCAAAGgt-actcaaatgttatgcaacttga-cactgatgatcatatatactctgtgggcttattg-atggaatctaatttcttctttgtgcttcccttaaag
|||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||| |||| ||||  ||||||| || |  || ||||| |||||||| ||| ||||  || |||| | |  |  ||||  | | ||| | |  | |||||||||   |||   || || | |||| ||  |  | ||| |  
AGAGCAGCTACAGGCTGAAAGGGATCTTAGAGCTGCACTGGAGATTGGATTAAGCATGTATTCTTCACAATTTTCTAGCTCGCACTCCATGGACTCAAAGgttactgaaatcataagcaagtagttctttgatagttacata-attgcg-gggcttattctgtggtggcttatgtattctatgcacaactctttag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25800836|gb|CA756797.1|CA756797
EST:     TAAGCATGTCTTCTGCACAGATTTCTAGTTCACGTTCTATGGATTCAAAG                         ACGAAGGCAGAGCTTGAGGAGATCGCTCTTGCGGAGGCTGATGTTGCAAGG
genomic: TAAGCATGTCTTCTGCACATATTTCTAGTTCACGTTCTATGGATTCAAAGgtactcaaat ... tcccttaaagACGAAGGCAGAGCTTGAGGAGATTGCTCTTGCGGAGGCTGATGTTGCAAGG
EST: gi|218499410|gb|FG963726.1|FG963726
EST:     TAAGCATGTCTTCTGCACATATTTCTAGTTCACGTTCTATGGATTCAAAG                         ACGAAGGCAGAGCTTGAGGAGATTGCTCTTGCGGAGGCTGATGTTGCAAGG
genomic: TAAGCATGTCTTCTGCACATATTTCTAGTTCACGTTCTATGGATTCAAAGgtactcaaat ... tcccttaaagACGAAGGCAGAGCTTGAGGAGATTGCTCTTGCGGAGGCTGATGTTGCAAGG