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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTGCGAACCGCCTGCTAAGCTCTAAGCAAACAATTCCACATTATTACCTGACAGTTGACACACGTGTTGATAATCTCATCAAgtatgttgaatgctaattgtgttattaaatcactatattttgtaggaaacatatgtgatggatcaccttcaaagtccatctctctggattttgtagcttttcttttaaaagtagttctttttttttaatctaatgcag

Basic information

species Oryza sativa
transcript LOC_Os07g22720.2
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58680453|gb|CK069140.1|CK069140
EST:     ATTCCACATTATTACCTGACAGTTGACACACGTGTTGATAATCTCATCAA                         GTTGCGAGGGGAACTGAATCCATTGCAGGAGTCCTCCGGTGGTAAGAAGAT
genomic: ATTCCACATTATTACCTGACAGTTGACACACGTGTTGATAATCTCATCAAgtatgttgaa ... tctaatgcagGTTGCGAGGGGAACTGAATCCATTGCAGGAGTCCTCCGGTGGTAAGAAGAT
EST: gi|58652754|gb|CK041434.1|CK041434
EST:     ATTCCACATTATTACCTGACAGTTGACACACGTGTTGATAATCTCATCAA                         GTTGCGAGGGGAACTGAATCCATTGCAGGAGTCCTCCGGTGGTAAGAAGAT
genomic: ATTCCACATTATTACCTGACAGTTGACACACGTGTTGATAATCTCATCAAgtatgttgaa ... tctaatgcagGTTGCGAGGGGAACTGAATCCATTGCAGGAGTCCTCCGGTGGTAAGAAGAT
EST: gi|55410697|gb|CV723073.1|CV723073
EST:     ATTCCACATTATTACCTGACAGTTGACACACGTGTTGATAATCTCATCAA                         GTTGCGAGGGGAACTGAATCCATTGCAGGAGTCCTCCGGTGGTAAGAAGAT
genomic: ATTCCACATTATTACCTGACAGTTGACACACGTGTTGATAATCTCATCAAgtatgttgaa ... tctaatgcagGTTGCGAGGGGAACTGAATCCATTGCAGGAGTCCTCCGGTGGTAAGAAGAT