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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAGGATGCTGTTGAGATTTCTCTGAAGGATATTGACCAACTGGCTAAAACTTCTTTCCCTCTTTGTATGCGCCACATGCTAGAGAAGgcaaggcaccttaaaagttcacatactttgcttaccttatgatcaggttatttagtgattgcttttatttttcag

Basic information

species Oryza sativa
transcript LOC_Os07g22400.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g22400.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G130351_T01 (Zea mays), 5'ss of exon 12
CCAAAGGATGCTGTTGAGATTTCTCTGAAGGATATTGACCAACTGGCTAAAACTTCTTTCCCTCTTTGTATGCGCCACATGCTAGAGAAGgcaaggcaccttaaaagttcacatactt-tgcttaccttatgatcaggttatttagtg-----attgcttttattt-ttcag---
||||||||||| ||||| || ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||| || ||||  ||| |||||||| ||||   ||  | | | || |||   | |||||   ||||||     | || ||| |||| ||  |   
CCAAAGGATGCCGTTGACATATCTCTAAAGGATATTGACCAACTGGCTAAAAGTTCTTTCCCTCTTTGTATGCGGCATATGCTTGATAAGgtgaggtaccttaaatgttcctctagatatacatatcttgcaaccaggtgtcttagtgttttcactgttttcatttattttgcag

upper sequence: LOC_Os07g22400.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G044317_T02 (Zea mays), 5'ss of exon 12
CCAAAGGATGCTGTTGAGATTTCTCTGAAGGATATTGACCAACTGGCTAAAACTTCTTTCCCTCTTTGTATGCGCCACATGCTAGAGAAGgcaaggcaccttaaaagttcacatactt-tgcttaccttatgatcaggttatttagtgattgcttttatttttcag
||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||  ||||||||||||  |||  |||    | | ||||||   | |||||   | | || || | |||||||| |||
CCAAAGGATGCTGTTGACATATCTCTAAAGGATATTGACCAACTGGCTAAAAGTTCTTTCCCTCTTTGTATGCGGCATATGCTAGATAAGgtgaggcaccttaaatattcctatagacatacataccttgcaaccaggtgtctcaatgttttcatttattttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|3766960|gb|AU031070.1|AU031070
EST:     AACTGGCTAAAACTTCTTTCCCTCTTTGTATGCGCCACATGCTAGAGAAG                         TTGAGAGAAAACCATCATCTGAAGCATGGGGGCAGAATGCAGTTTGGTCTT
genomic: AACTGGCTAAAACTTCTTTCCCTCTTTGTATGCGCCACATGCTAGAGAAGgcaaggcacc ... tatttttcagTTGAGAGAAAACCATCATCTGAAGCATGGGGGCAGAATGCAGTTTGGTCTT