1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAGgtacatttgttttctgttcaacttttaatggctgcactagagtacaaccccaaccttctgaattgaaccttaccagcactaattgaaccttaccagcact...
species | Oryza sativa |
transcript | LOC_Os07g16970.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAG ACGGTTGATCTCAGTGTGGATTTAAGTGCTGCGAGTGCTGCTGAAGATGATEST: gi|88218519|gb|CI218368.1|CI218368
genomic: AGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAGgtacatttgt ... ttttatccagACGGTTGATCTCAGTGTGGATTTAAGTGCTGCGAGTGCTGCTGAAGATGAT
EST: AGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAG ACGGTTGATCTCAGTGTGGATTTAAGTGCTGCGAGTGCTGCTGAAGATGATEST: gi|29616693|gb|CB621705.1|CB621705
genomic: AGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAGgtacatttgt ... ttttatccagACGGTTGATCTCAGTGTGGATTTAAGTGCTGCGAGTGCTGCTGAAGATGAT
EST: AGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAG ACGGTTGATCTCAGTGTGGATTTAAGTGCTGCGAGTGCTGCTGAAGATGATEST: gi|88257202|gb|CI359590.1|CI359590
genomic: AGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAGgtacatttgt ... ttttatccagACGGTTGATCTCAGTGTGGATTTAAGTGCTGCGAGTGCTGCTGAAGATGAT
EST: AGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAG ACGGTTGATCTCAGTGTGGATTTAAGTGCTGCGAGTGCTGCTGAAGATGATEST: gi|86838203|gb|CI343373.1|CI343373
genomic: AGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAGgtacatttgt ... ttttatccagACGGTTGATCTCAGTGTGGATTTAAGTGCTGCGAGTGCTGCTGAAGATGAT
EST: AGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAG ACGGTTGATCTCAGTGTGGATTTAAGTGCTGCGAGTGCTGCTGAAGATGATEST: gi|86838076|gb|CI343326.1|CI343326
genomic: AGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAGgtacatttgt ... ttttatccagACGGTTGATCTCAGTGTGGATTTAAGTGCTGCGAGTGCTGCTGAAGATGAT
EST: AGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAG ACGGTTGATCTCAGTGTGGATTTAAGTGCTGCGAGTGCTGCTGAAGATGATEST: gi|88840159|gb|CI079613.1|CI079613
genomic: AGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAGgtacatttgt ... ttttatccagACGGTTGATCTCAGTGTGGATTTAAGTGCTGCGAGTGCTGCTGAAGATGAT
EST: AGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAG ACGGTTGATCTCAGTGTGGATTTAAGTGCTGCGAGTGCTGCTGAAGATGAT
genomic: AGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAGgtacatttgt ... ttttatccagACGGTTGATCTCAGTGTGGATTTAAGTGCTGCGAGTGCTGCTGAAGATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAGgtacatttgttttctgttcaacttttaatggctgcactagagtacaaccccaaccttctgaattgaaccttaccagcactaattgaaccttaccagcact
- - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA