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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAATTACGACAATGCGGACACTCTACCAAAAATGCAAACTGGTCCATGGTGATCTGAGTGAATACAACATTCTTTATTTCGAGgtagttgaactctgtttattatattttttaacatcattttttttttcagatcaatggctctgattcccaccatttattctccttgtgcag

Basic information

species Oryza sativa
transcript LOC_Os07g06820.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G120329_T02 (Zea mays), 5'ss of exon 8
TTAATTACGACAATGCGGACACTCTACCAAAAATGCAAACTGGTCCATGGTGATCTGAGTGAATACAACATTCTTTATTTCGAGgtagttgaactc-tgtttattatatttttt---aacatcattttttttttcagatcaatggctctgattcccaccatt-tattctccttgtgcag
 ||||||| ||||||||||| || |||||||  ||||||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||  | ||| | || | ||||   |||   |||||  | |  ||||  || | | ||   || ||  | | | |  | | |   |||   ||
ATAATTACAACAATGCGGACTCTTTACCAAACGTGCAAACTGGTCCATGGTGATTTGAGTGAATACAATATTCTATATTTTGAGgtagtgaacctcatattaaatataccatttccaaacatattgtacttttcaagtttactgttccttatctctatcctgatgtacctattgcctag

upper sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA18G46440.1 (Glycine max), 5'ss of exon 8
TTAATTACGACAATGCGGACACTCTACCAAAAATGCAAACTGGTCCATGGTGATCTGAGTGAATACAACATTCTTTATTTCGAGgtagttgaactctgtttattatattttttaacatcattttttttttcagatcaatggctctgattcccaccatttattctccttgtgcag
 | ||||   ||||||||||| | || || ||||||||| |||| || |||||||| |||||||| || || |||||||| |||||       |  | |  | | ||| ||| |      |  | | | |  | ||||| | |   ||   ||  || |  | |  ||||   |
-TTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGGtgaacaccccttttccagtttatatttcattgatttaatgtctatttg-tcaatagtt--aat---caatatgttctttatttgtcagg

upper sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA09G39750.1 (Glycine max), 5'ss of exon 8
TTAATTACGACAATGCGGACACTCTACCAAAAATGCAAACTGGTCCATGGTGATCTGAGTGAATACAACATTCTTTATTTCGAGgtagttgaactctgt-ttattatattttttaac-atcattttttttttcagatcaatggctctgattcccaccatttattctccttgtg-cag
 | ||||   ||||||||||| | || || ||||||||| |||| ||||||||||| |||||||| || || |||||||| |||||       | || |   | | ||| ||| |   ||    | | | ||    ||||| | |             ||||||   |   || |||
ATTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCATGGTGATCTCAGTGAATATAATATACTTTATTTTGAGgtgaacaccccctttgccagtttatatttcattgattgaatgtgtctttctgtcaatagttaattcatatggtctttatttgtcacttgtcag

upper sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv17s0000g01390.t01 (Vitis vinifera), 5'ss of exon 8
TTAATTACGACAATGCGGACACTCTACCAAAAATGCAAACTGGTCCATGGTGATCTGAGTGAATACAACATTCTTTATTTCGAGgtagttgaactctgtttattatatttt-ttaacatcattttttttttcagatcaatggctctgattcccaccatttattctccttgtgcag
 | |||| | ||||||||||  | || || || ||||||||||| ||||| || || |||||||| ||||| |||||||| ||||||          |||| | | |||    | ||  ||  | | || |  |  ||||   |   | ||   ||   ||||   |        
ATGATTATGGCAATGCGGACGTTATATCAGAAGTGCAAACTGGTACATGGAGACCTCAGTGAATATAACATACTTTATTTTGAGgtatgcatttatcgtttttcacattgaactgactacacatgtattat--ggacaatcatttataatctttcctcctatttgacag------