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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAAGGGACAGATCAGCCTGGTAGTATCCCTAAGAGTTGCATAACGCCTCGCACAAAGTGGGAACAAGTCAAGgtatggtggttgacatgacttttgcactgccaagatactaattgtcttgtcttgatttaatagataggttctcaagctcagctttgctttgaactaggat...

Basic information

species Oryza sativa
transcript LOC_Os06g49990.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g49990.3 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G116434_T01 (Zea mays), 5'ss of exon 12
CTGAAGGGACAGATCAGCCTGGTAGTATCCCTAAGAGTTGCATAACGCCTCGCACAAAGTGGGAACAAGTCAAGgtatggtggttgacatgactttt--gcactgccaa-gatactaattgtcttgtcttgatttaatagataggttctcaagctcagctttgctttgaactaggat
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CTGAAGGTACATGTCAGCCTAATAATGCCTCAAAAAATTGCATAACACCTAGTACAAAATGGGAACAAGTCAAGgtatggcattctacatgacttattaacactgttgatggtaccactggtagt-ccttgatgtgtta--tttgccttcagaatgccgtttgttttttgccatgta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88508220|gb|CI435726.1|CI435726
EST:     CCTAAGAGTTGCATAACGCCTCGCACAAAGTGGGAACAAGTCAAG                         GAGATCCTTGGTGATTGTGGTCGAGCAGCAATCCAGACGCAAGGCTCCATG
genomic: CCTAAGAGTTGCATAACGCCTCGCACAAAGTGGGAACAAGTCAAGgtatggtggt ... gttatattagGAGATCCTTGGTGATTGTGGTCGAGCAGCAATCCAGACGCAAGGCTCCATG
EST: gi|33687914|gb|CF316153.1|CF316153
EST:     GTATCCCTAAGAGTTGCATAACGCCTCGCACAAAGTGGGAACAAGTCAAG                         GAGATCCTTGGTGATTGTGGTCGAGCAGCAATCCAGACGCAAGGCTCCATG
genomic: GTATCCCTAAGAGTTGCATAACGCCTCGCACAAAGTGGGAACAAGTCAAGgtatggtggt ... gttatattagGAGATCCTTGGTGATTGTGGTCGAGCAGCAATCCAGACGCAAGGCTCCATG
EST: gi|88249403|gb|CI249252.1|CI249252
EST:     GTATCCCTAAGAGTTGCATAACGCCTCGCACAAAGTGGGAACAAGTCAAG                         GAGATCCTTGGTGATTGTGGTCGAGCAGCAATCCAGACGCAAGGCTCCATG
genomic: GTATCCCTAAGAGTTGCATAACGCCTCGCACAAAGTGGGAACAAGTCAAGgtatggtggt ... gttatattagGAGATCCTTGGTGATTGTGGTCGAGCAGCAATCCAGACGCAAGGCTCCATG
EST: gi|33687915|gb|CF316154.1|CF316154
EST:     GTATCCCTAAGAGTTGCATAACGCCTCGCACAAAGTGGGAACAAGTCAAG                         GAGATCCTTGGTGATTGTGGTCGAGCAGCAATCCAGACGCAAGGCTCCATG
genomic: GTATCCCTAAGAGTTGCATAACGCCTCGCACAAAGTGGGAACAAGTCAAGgtatggtggt ... gttatattagGAGATCCTTGGTGATTGTGGTCGAGCAGCAATCCAGACGCAAGGCTCCATG