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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATGCTTTCCCTGGTGATGCAATTATATTCATGAGGGTTTTGAATCTTCTTAGAGgtatgtttttcattctttcctttgaaatatccagtatcatggtaacatgctctctattatctgcacttatgcag

Basic information

species Oryza sativa
transcript LOC_Os06g48770.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g48770.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G140917_T01 (Zea mays), 5'ss of exon 13
GTTGATGCTTTCCCTGGTGATGCAATTATATTCATGAGGGTTTTGAATCTTCTTAGAGgtatgtttttcatt----------ctttcctttgaaatatccagtatcatggtaacatgctctctattatctgc------acttatgcag
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GTTGATGCTTTCCCCGGGGATGCCATAATATTTATGAGGGTCTTGAATCTCCTCAGAGgtatgtgtttgatttgggcttactcgttcctctcaggtatccagtgtcttaatgacatttatttatttatttttttaaaaaatcctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58606319|gb|CK034352.1|CK034352
EST:     TTTCCCTGGTGATGCAATTATATTCAGGGGGGTTTTGAATCTTCTTAGAG                         GGCTATCAGCATCACTAAATGTTAGGATAGTTTATCTAGACATCATGAGGC
genomic: TTTCCCTGGTGATGCAATTATATTCATGAGGGTTTTGAATCTTCTTAGAGgtatgttttt ... acttatgcagGGCTATCAGCATCACTAAATGTTAGGATAGTTTATCTAGACATCATGAGGC
EST: gi|29679895|gb|CB676170.1|CB676170
EST:     TTTCCCTGGTGATGCAATTATATTCATGAGGGTTTTGAATCTTCTTAGAG                         GGCTATCAGCATCACTAAATGTTAGGATAGTTTATCTAGACATCATGAGGC
genomic: TTTCCCTGGTGATGCAATTATATTCATGAGGGTTTTGAATCTTCTTAGAGgtatgttttt ... acttatgcagGGCTATCAGCATCACTAAATGTTAGGATAGTTTATCTAGACATCATGAGGC
EST: gi|58590136|gb|CF988444.1|CF988444
EST:     GCAATTATATTCATGAGGGTTTTGAATCTTCTTAGAG                         GGTTATCAGCATCACTAAGATGTTAGGATAGTTTATCTAGACATCATGAGG
genomic: GCAATTATATTCATGAGGGTTTTGAATCTTCTTAGAGgtatgttttt ... acttatgcagGGCTATCAGCATCACTAA-ATGTTAGGATAGTTTATCTAGACATCATGAGG
EST: gi|87005733|gb|CI316152.1|CI316152
EST:     TTTCCCTGGTGATGCAATTATATTCATGA-GGTTTTGAATCTTCTTAGAG                         GGCTATCAGCATCACTAAATGTTAGGATAGTTTATCTAGACATCATGAGGC
genomic: TTTCCCTGGTGATGCAATTATATTCATGAGGGTTTTGAATCTTCTTAGAGgtatgttttt ... acttatgcagGGCTATCAGCATCACTAAATGTTAGGATAGTTTATCTAGACATCATGAGGC