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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGTTATGAGAACAGTGAGGAACACAGTTGACACTGGACGGACAGTGGTTTGCACAATTCACCAGCCAAGCATTGACATATTTGAGGCTTTTGATGAGgtgactatgaatagtttacttacatagtaattccaccttttagtaactaaatagtaactcgagcttgaactctcgtgcag

Basic information

species Oryza sativa
transcript LOC_Os06g36090.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G366146_T01 (Zea mays), 5'ss of exon 12
CATTGTTATGAGAACAGTGAGGAACACAGTTGACACTGGACGGACAGTGGTTTGCACAATTCACCAGCCAAGCATTGACATATTTGAGGCTTTTGATGAGgtgactatgaatagtttact-tacatagtaattccacctttt-agtaactaaatagtaactcgagcttgaactctcgtgcag
 ||||| |||||||| ||| | |||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||||| ||||||  | |||  | ||  |||| ||| |||||||| || ||||||||| ||||   || |    |||  ||||||
AATTGTCATGAGAACCGTGCGAAACACAGTTGACACCGGACGGACAGTTGTTTGCACAATCCATCAGCCAAGCATTGACATCTTTGAGGCTTTTGATGAGgtggctatgaggaattttttataagtagttattgcaccttttcagaaactaaatattaacctaagtt----ctcatgtgcag

upper sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 16
CATTGTTATGAGAACAGTGAGGAACACAGTTGACACTGGACGGACAGTGGTTTGCACAATTCACCAGCCAAGCATTGACATATTTGAGGCTTTTGATGAGgtgactatgaatagtttacttacatagtaattccacctttt-agtaactaaatagtaactcgagcttgaactctcgtgcag
 ||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| |||||  |||||||||||||| |||||| || |||   ||  | || ||| |||||||| |  || |||||| |||||  || |    |||   |||||
AATTGTCATGAGAACTGTGCGGAACACAGTTGACACTGGACGGACAGTTGTTTGCACAATCCATCAGCCAAGCATCGACATCTTTGAATCTTTTGATGAGgtggctatgagtaatttttgtaagtggttattgcaccttttcaacaattaaatattaacttaagtt----ctcatatgcag

upper sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA13G43140.1 (Glycine max), 5'ss of exon 16
CATTGTTATGAGAACAGTGAGGAACACAGTTGACACTGGACGGACAGTGGTTTGCACAATTCACCAGCCAAGCATTGACATATTTGAGGCTTTTGATGAGgtgactatgaa----tagtttacttacatagta-attccaccttttagtaactaaatagtaactcgagcttgaac---tctcgtgcag---
|||||| ||||| || ||||| || || |||||||||||| | ||||| || |||||||||||||| || || || || || ||||| || ||||| |||||  | |  ||    || |||   |   |  ||  || |  || ||  |  | |  |  |   | |    | |||   ||| |||||    
CATTGTAATGAGGACTGTGAGAAATACTGTTGACACTGGAAGAACAGTTGTATGCACAATTCACCAACCTAGTATCGATATCTTTGAAGCCTTTGACGAGgtatcaacaaactcataatttgtatgtgttatatgtttcttctctttatctccat-tgctctttggtagataaacatttcttgtgcaccag

upper sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA08G21540.2 (Glycine max), 5'ss of exon 18
CATTGTTATGAGAACAGTGAGGAACACAGTTGACACTGGACGGACAGTGGTTTGCACAATTCACCAGCCAAGCATTGACATATTTGAGGCTTTTGATGAGgtgactatgaat----agtttacttacatagtaattccaccttttagtaactaaatagtaactcgagcttga------actctcgtgcag----
 ||||||||||| || ||||| ||||| || ||||||||| | ||||| || ||||||||||||||||| |||||||| || ||||| || |||||||||||  | |  ||     |    | ||     ||| |||     |||         ||  |   |   |||| |      | |||  |   |    
TATTGTTATGAGGACTGTGAGAAACACTGTGGACACTGGAAGAACAGTTGTCTGCACAATTCACCAGCCTAGCATTGATATCTTTGAAGCCTTTGATGAGgtaccaaccaacctacaaaccatttgttgtgtatttcttttctttgtatctcctatcctctttaatgcttaatgaaatattcttttttcgccag

upper sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA07G01860.1 (Glycine max), 5'ss of exon 17
CATTGTTATGAGAACAGTGAGGAACACAGTTGACACTGGACGGACAGTGGTTTGCACAATTCACCAGCCAAGCATTGACATATTTGAGGCTTTTGATGAGgtgac--------tatgaatagtttact-tacatagtaattcc----accttttagtaacta-aatagtaactcgagcttgaactctcgtgcag
 ||||||||||| || ||||| ||||| || ||||| ||| | ||||| || ||||||||||||||||| |||||||| || ||||| || |||||||||||  |        ||  ||  ||||  | |  ||     |||     | ||  ||    ||   ||| | | |  |   |    | ||  ||||
TATTGTTATGAGGACTGTGAGAAACACTGTGGACACAGGAAGAACAGTTGTCTGCACAATTCACCAGCCTAGCATTGATATCTTTGAAGCCTTTGATGAGgtaccaaccaacctacaaaccgtttgttgtgtatttcttttctttgtatctcctatcctctttgatacttaatgaaatgttctttttccggcag

upper sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA15G02220.1 (Glycine max), 5'ss of exon 17
CATTGTTATGAGAACAGTGAGGAACACAGTTGACACTGGACGGACAGTGGTTTGCACAATTCACCAGCCAAGCATTGACATATTTGAGGCTTTTGATGAGgtgactatgaatagtttacttacatagtaattccacc-ttttagtaactaaatagtaactcgagcttgaactctcgtgcag---
|||||| ||||| || ||||| ||||| |||||||||||| | ||||| || |||||||||||||| || || ||||| || ||||| || ||||| |||||  | |  ||    | | ||   |  || || |    | |   |  ||   | |||  |  |  ||    ||| ||| |    
CATTGTGATGAGGACTGTGAGAAACACTGTTGACACTGGAAGAACAGTTGTATGCACAATTCACCAACCTAGTATTGATATCTTTGAAGCCTTTGACGAGgtaccaactaactcataatttgtgtcatattttctttatctccattgctctttggtagataaatatt---ttcttgtgtaccag

upper sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 12
lower sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 15
CATTGTTATGAGAACAGTGAGGAACACAGTTGACACTGGACGGACAGTGGTTTGCACAATTCACCAGCCAAGCATTGACATATTTGAGGCTTTTGATGAGgtgactatgaatagtttacttacatagtaattccaccttttagta-actaaatagtaactcgagcttgaactctcgtgcag---
|||||||||||| ||||||||||||||||| ||||||||| | || || || |||||||| || ||||||||||| || || || || || || ||||||||   ||| |  |  ||  | |||   |   || | | | |  || | |   | ||  |||   |      | | || ||    
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCGATGAGgtagatatcatgaaattggtcacaacttttctcaatcatgttttatattgtgttgtctctcacaccgatggtattgttcatcag

upper sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 12
lower sequence: Vv09s0002g03560.t01 (Vitis vinifera), 5'ss of exon 6
CATTGTTATGAGAACAGTGAGGAACACAGTTGACACTGGACGGACAGTGGTTTGCACAATTCACCAGCCAAGCATTGACATATTTGAGGCTTTTGATGAGgtgactatgaatagtttacttacatagtaattccaccttttagta-actaaatagtaactcgagcttgaactctcgtgcag---
|||||||||||| ||||||||||||||||| ||||||||| | || || || |||||||| || ||||||||||| || || || || || ||  |||||||   ||| |  |  ||  | |||   |   || | | | |  || | |     ||  |||   |      | | || ||    
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCAATGAGgtagatatcatgaaattggtcacaacttttctcaatcatgttttatattgtgctgtctctcacaccgatggtattgttcatcag

upper sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 12
lower sequence: Vv09s0002g03630.t01 (Vitis vinifera), 5'ss of exon 17
CATTGTTATGAGAACAGTGAGGAACACAGTTGACACTGGACGGACAGTGGTTTGCACAATTCACCAGCCAAGCATTGACATATTTGAGGCTTTTGATGAGgtgactatgaatagtttacttacatagtaattccaccttttagtaa----ctaaatagtaactcgagcttgaactctcgtgcag-----------
 ||||| ||||| || |||||||||||||| ||||||||| | || || || |||||||| || ||||| || || || || ||||| || ||||||||||| |  |  ||||   |    | |    | ||| |  ||||   ||     | ||| | || |    |   | |||||  |              
TATTGTGATGAGGACGGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCCAGTATCGATATCTTTGAAGCCTTTGATGAGgtaatgaccaataccatctccataaccgatttctatattttctgaaaggcttcaatggcaa-taatacagaatctctcacgttacttttcatcag