1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTACCAACTCGCTGAAGACTTAGCTAGAGCATTTACTGAGCGCACAATTTTGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAGgtatatgtattctcctcttgctacctagctgaagtccttcctgaatcccttcgattgttgtattgttattattatgtgaattttcatgcagaagtaatcttcatgtaaccttgaatttgcgttctgcag
species | Oryza sativa |
transcript | LOC_Os06g24704.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAG GATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAAEST: gi|88197237|gb|CI197087.1|CI197087
genomic: CAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAGgtatatgtat ... cgttctgcagGATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAA
EST: TGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAG GATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAAEST: gi|88967904|gb|CI098146.1|CI098146
genomic: TGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAGgtatatgtat ... cgttctgcagGATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAA
EST: TTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAG GATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAAEST: gi|29670182|gb|CB666457.1|CB666457
genomic: TTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAGgtatatgtat ... cgttctgcagGATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAA
EST: TGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAG GATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAAEST: gi|14571492|gb|BI118860.1|BI118860
genomic: TGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAGgtatatgtat ... cgttctgcagGATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAA
EST: TGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAG GATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAAEST: gi|29665964|gb|CB662239.1|CB662239
genomic: TGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAGgtatatgtat ... cgttctgcagGATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAA
EST: TGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAG GATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAAEST: gi|86485162|gb|CI127795.1|CI127795
genomic: TGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAGgtatatgtat ... cgttctgcagGATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAA
EST: TGCGAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAG GATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAAEST: gi|89178953|gb|CI043458.1|CI043458
genomic: TGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAGgtatatgtat ... cgttctgcagGATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAA
EST: TTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAG GATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAAEST: gi|29670227|gb|CB666502.1|CB666502
genomic: TTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAGgtatatgtat ... cgttctgcagGATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAA
EST: TGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAG GATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGAAGAAEST: gi|218485341|gb|FG954862.1|FG954862
genomic: TGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAGgtatatgtat ... cgttctgcagGATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAA
EST: TGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAG GATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAAEST: gi|86491093|gb|CI133726.1|CI133726
genomic: TGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAGgtatatgtat ... cgttctgcagGATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAA
EST: TGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAG GATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAA
genomic: TGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAGgtatatgtat ... cgttctgcagGATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACCAACTCGCTGAAGACTTAGCTAGAGCATTTACTGAGCGCACAATTTTGCAAATATTTTTGGAGGATGAGAAGAATATTCCTACTGGTTCTTTAAAGgtatatgtattctcctcttgctacctagctgaagtccttcctgaatcccttcgattgttgtattgttattattatgtgaattttcatgcagaagtaatcttcatgtaaccttgaatttgcgttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG