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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGCAGCTCAGGAGATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatctagcatgcaaatccatagtcagtttacagttgtttgctcgaataagctggatatatccatgtggtggatattggagcatcaaacttttgaaaatgttctgattttaacatctgaatatgcag

Basic information

species Oryza sativa
transcript LOC_Os06g03760.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM5G871262_T01 (Zea mays), 5'ss of exon 1
TCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGCAGCTCAGGAGATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatctagcatgcaaatccatagtcagtttacagttgtttgctcgaataagctggatatatccatgtggtggatattggagcatcaaacttttgaaaatgttctgat--tttaacatctgaatatgcag
|||||||||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||| ||||||| || ||||||||||||||||| ||||||| || || |||| | ||| | ||| |||| || | | | ||| || ||||||||| | ||||| |||| | | |||| || ||| | || ||||||
TCTGTGCCACGGCTTTTGCCTATTATGCACAAGCAACTGCTGCTCAAGAGATCTTTGGCCACACATTGCAATCCCTTCGTGGAATTAAGTATCTTTACAAgtgagtctc--------aaatgaagagtgaaatta--gttgctttgttta------caggtat-----tgctgtggatatt------taaaact--tgaacgtactttgatacttgaaccacaaaacatgcag

upper sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G012284_T01 (Zea mays), 5'ss of exon 10
TCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGCAGCTCAGGAGATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatctagcatgcaaatccatagtcagtttacagttgtttgctcgaataagctggatatatccatgtggtggatattggagcatcaaacttttgaaaatgttctgatt-ttaacatctgaatatgcag
|||||||||| |||||||| || || || ||||||||||||||||| ||||| ||||||||||| ||||||| || ||||||||||||||||| ||||||| || || ||||| | || |||| |||| | | | | | ||| || || ||| || ||| ||| || | ||||||| || || | || ||||||
TCTGTGCCACGGCTTTTGCCTACTACGCACAAGCAACTGCAGCTCAAGAGATATTTGGCCACACTTTGCAATCCCTTCGTGGAATTAAGTATCTTTACAAgttagtctcc------caaatgaagagcagattta--gttgctctgttttacagg-------------tgttgtagacatt-----attaaa-tttcgactgtattctgatcctttaccacaaaacatgcag

upper sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 12
TCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGCAGCTCAGGAGATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatctagcatgcaaatccatagtcagtttacagttgtttgctcgaataagc-tggatatatccatgtggtggatattggagcatcaaacttttgaaaatgttctgattttaacatctgaatatgcag
|||| ||||||| ||||| || ||||| |||||||||||||| ||||| || ||||||||||| || | ||||| || |||||||| ||| | ||||||| || | | || | | | | | || | || ||| ||| | || | | | || | | | | |
TCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGCAGCCCAGGAAATATTTGGCCACACTTTGGAGTCTCTTCGAGGAATTAAATATTTGTACAAgtgagtcaatcgggatttcttctgcctctcttgctctgccttatactggggcaaaaatggtcccttccttttgctaagttgtagatc-tagagcacacaat-------------------------------

upper sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 12
TCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGCAGCTCAGGAGATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatctagcatgcaaatccatagtcagtttacagttgtttgctcgaataagctggatatatccatgtggtggatattggagcatcaaacttttgaaaatgttctgattttaacatctgaatatgcag
|||| ||||||| ||||| || ||||| |||||||||||||| ||||| || ||||||||||| || | ||||| ||||||||||| ||| | |||||||| || || || | | | ||| | | | | | || ||| | | | || || | | || | | || ||| | | | | ||| |
TCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGCAGCACAGGAAATATTTGGCCACACCTTGGAGTCTCTTCGTGGAATTAAATATTTGTACAAgtaagt------caagc-------tggatatttttccctcactctccccaaccctctgattgggtgaagatg-tgaagtatagaacctaaacttttcgtttacttgcaaattgt-----------------

upper sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 11
TCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGCAGCTCAGGAGATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgt--atctagcatgcaaatccatagtcagtttacagttgtttgctcgaataagc-tggatatatccatgtggtggatattggagcatcaaacttttgaaaatgttctgattttaacatctgaatatgcag
|||| ||||||| ||||| || ||||| |||||||||||||| ||||| || ||||||||||| || | ||||| || |||||||| ||| | ||||||| || |||| | | | | | | | | | | | | || | || ||| ||| | || | | | || | | | | |
TCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGCAGCCCAGGAAATATTTGGCCACACTTTGGAGTCTCTTCGAGGAATTAAATATTTGTACAAgtgagtcaatctggatttcttctgcctctcttgct--ctgccttatactggggcaaaaatggtcccttccttttgctaagttgtagatc-tagagcacacaat-------------------------------

upper sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 12
TCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGCAGCTCAGGAGATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatctagcatgcaaatccatagtcagtttacagttgtttgctcgaataagctggatatatccatgtggtggatattggagcatcaaacttttgaaaatgttctgattttaacatctgaatatgcag
|||| ||||||| ||||| || ||||| |||||||||||||| ||||| || ||||||||||| || ||||||| ||||||||||| ||| | |||||||| | || ||| || | || ||| | | | | | | || ||||| | | ||| | | || | | | ||| | || | | ||||
TCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGCAGCACAGGAAATATTTGGCCACACCTTGGAATCTCTTCGTGGAATTAAATATTTGTACAAgtaag--tcaagc-tggatatt---------tttcccgcgctcttccccaaccc-ttggattgggtgaagacgtgaagtatagaacctacacttttcgttaacttgcaaattt------------------

upper sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 12
TCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGCAGCTCAGGAGATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgt-atctagcatgcaaatccatagtcagtttacagttgtttgctcgaataagctggatatatccatgtggtggatattggagcatcaaacttttgaaaatgttctgattttaacatctgaatatgcag
|||| ||||||| ||||| || ||||| |||||||||||||| ||||| || ||||| ||||| || | ||||| || |||||||| ||| | ||||||| || | | || | | | | | | | | | | || | | || | | | | | | || ||| | | | | ||||
TCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGCAGCCCAGGAAATATTTGGTCACACTTTGGAGTCTCTTCGAGGAATTAAATATTTGTACAAgtgagtcagtctggattcttctgcctctcctgct--ctgccttctggtggggcaaaaatggtcccttcttttcact-atgttgtaaatctagagcac--acaatg---------------------------

upper sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 12
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 12
TCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGCAGCTCAGGAGATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatctagcatgcaaatccatagtcagtttacagttgtttgctcgaataagctggatatatccatgtggtggatattggagcatcaaacttttgaaaatgttctgattttaacatctgaatatgcag
|||| ||||| || |||| |||||||| ||||| || || ||||||||||| ||||||||||| |||| || || || || |||||||| ||||||||||| ||| || | | | || | || | || |||| | | | ||| ||| | | | ||| || | |
TCTGCGCCACTGCATTTGGATATTATGCTCAAGCCACCGCCGCTCAGGAGATATTTGGCCACACTTTGCAGTCCCTTCGCGGTATTAAGTACCTCTACAAgtaagtaa-tatcgggtttttgcaaataaaggtctcacttgtgtacataag---actgatgataatcttccctttcttatcggtatctttcag--------------------------------------

upper sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 12
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 12
TCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGCAGCTCAGGAGATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatctagcatgcaaatccatagtcagtttacagttgtttgctcgaataagctggatatatccatgtggtggatattggagcatcaaacttttgaaaatgttctgattttaacatctgaatatgcag
| |||||||| || |||| ||||| || ||||| ||||| || |||||||| |||||||||||| |||| || || | ||||||||||| || |||||||| ||| | || |||| | |||| | |||| ||| | ||| || ||||| | | | | || |
TTTGTGCCACTGCATTTGGATATTACGCTCAAGCCACTGCTGCCCAGGAGATATTTGGCCACACATTGCAGTCCCTTAGAGGAATTAAGTACCTTTACAAgtaagtagaagtggtataa---cata------tagcagtcatatgct---atatccgtgatgcgtct----------tattgaggttttatatttcag---------------------------------

upper sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 12
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 12
TCTGTGCCACAGCTTTTGCTTATTATGCGCAAGCAACTGCAGCTCAGGAGATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatctagcatgcaaatccatag------tcagtttacagttgtttgctcgaataagctggatatatccatgtggtggatattggagcatcaaacttttgaaaatgttctgattttaacatctgaatatgcag
|||| |||||||| |||| ||| ||||| ||||||||||| || ||||| || ||||||||||||||| |||||||| |||||||| ||| | ||||||| ||| | | | || || | | || | || || | | || | | || ||| |||| || || | |
TCTGCGCCACAGCATTTGGTTACTATGCTCAAGCAACTGCTGCACAGGAAATATTTGGCCACACACTGGAATCTCTCAAAGGAATTAAATATTTATACAAgtcggtaacaattgttcatgtctactgatgtcctctgattggagatatggtactgatttggttgtgtatgcccat-tgttgaactgcag------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88974640|gb|CI022966.1|CI022966
EST:     ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|89176031|gb|CI043052.1|CI043052
EST:     ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|88737037|gb|CI760545.1|CI760545
EST:     ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|87019966|gb|CI299364.1|CI299364
EST:     ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|88471869|gb|CI409140.1|CI409140
EST:     AGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: AGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|88762181|gb|CI771737.1|CI771737
EST:     ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAACTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|89175363|gb|CI042384.1|CI042384
EST:     TCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: TCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|89176072|gb|CI043093.1|CI043093
EST:     ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|88519661|gb|CI447315.1|CI447315
EST:     TGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: TGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|88907637|gb|CI090431.1|CI090431
EST:     ATCTTNGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|88997561|gb|CI390227.1|CI390227
EST:     ATCTTT-GCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|58684950|gb|CK073637.1|CK073637
EST:     ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCT
EST: gi|89163502|gb|CI100392.1|CI100392
EST:     ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|86869332|gb|CI339056.1|CI339056
EST:     ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|86484582|gb|CI127215.1|CI127215
EST:     ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|5667175|gb|AU077435.1|AU077435
EST:     ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|88961963|gb|CI097116.1|CI097116
EST:     ATCTTGGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|55827892|gb|AU063117.2|AU063117
EST:     ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|88284096|gb|CI405542.1|CI405542
EST:     ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|89163461|gb|CI100351.1|CI100351
EST:     ATCTTNGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
EST: gi|29679858|gb|CB676133.1|CB676133
EST:     ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAA                         GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT
genomic: ATCTTTGGCCACACACTGCAATCTCTCCGTGGAATTAAGTATCTCTACAAgtatgtatct ... gaatatgcagGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTT