1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAGgttagtcctctgcacattagcagttataccattggccaatgaatggtaataggcagttgaaaccttactttgggatcagacaggaccaagcactcggtgc...
species | Oryza sativa |
transcript | LOC_Os06g02620.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAG GTTCGTGAGGATCCGGTATTTCGAAGAGAGAAAGGTGATATTCATGTAGATEST: gi|38477689|gb|CF961822.1|CF961822
genomic: GAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAGgttagtcctc ... ttttttccagGTTCGTGAGGATCCGGTATTTCGAAGAGAGAAAGGTGATATTCATGTAGAT
EST: GAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAG GTTCGTGAGGATCCGGTATTTCGAAGAGAGAAAGGTGATATTCATGTAGATEST: gi|58602124|gb|CK012652.1|CK012652
genomic: GAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAGgttagtcctc ... ttttttccagGTTCGTGAGGATCCGGTATTTCGAAGAGAGAAAGGTGATATTCATGTAGAT
EST: GAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAG GTTCGTGAGGATCCGGTATTTCGAAGAGAGAAAGGTGATATTCATGTAEST: gi|29614537|gb|CB619550.1|CB619550
genomic: GAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAGgttagtcctc ... ttttttccagGTTCGTGAGGATCCGGTATTTCGAAGAGAGAAAGGTGATATTCATGTA
EST: GAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAG GTTCGTGAGGATCCGGTATTTCGAAGAGAGAAAGGTGATATTCATGTAGATEST: gi|58654377|gb|CK043057.1|CK043057
genomic: GAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAGgttagtcctc ... ttttttccagGTTCGTGAGGATCCGGTATTTCGAAGAGAGAAAGGTGATATTCATGTAGAT
EST: GAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAG GTTCGTGAGGATCCGGTATTTCGAAGAGAGAAAGGTGAEST: gi|58598364|gb|CK008892.1|CK008892
genomic: GAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAGgttagtcctc ... ttttttccagGTTCGTGAGGATCCGGTATTTCGAAGAGAGAAAGGTGA
EST: GAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAG GTTCGTGAGGATCCGGTATTTCGAAGAGAGAAAGGTGATATTC
genomic: GAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAGgttagtcctc ... ttttttccagGTTCGTGAGGATCCGGTATTTCGAAGAGAGAAAGGTGATATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAGgttagtcctctgcacattagcagttataccattggccaatgaatggtaataggcagttgaaaccttactttgggatcagacaggaccaagcactcggtgc
- - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG