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GTGGTTGCTACTGGAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATTgttagttgcatccccattaattttcaggcatgctactttcgaagaatatataatttatttatttttattttttttccag
species | Oryza sativa |
transcript | LOC_Os05g50280.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATT ATCTCTACTACAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTTEST: gi|29678789|gb|CB675064.1|CB675064
genomic: GAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATTgttagttgca ... ttttttccagATCTCTACTACAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTT
EST: GAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATT ATCTCTACTACAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTTEST: gi|29678790|gb|CB675065.1|CB675065
genomic: GAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATTgttagttgca ... ttttttccagATCTCTACTACAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTT
EST: AGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATT ATCTCTACTACAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTTEST: gi|218482029|gb|FG948463.1|FG948463
genomic: AGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATTgttagttgca ... ttttttccagATCTCTACTACAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTT
EST: GAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATT ATCTCTACTACAEST: gi|29674764|gb|CB671039.1|CB671039
genomic: GAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATTgttagttgca ... ttttttccagATCTCTACTACA
EST: CTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATT ATCTCTACTACAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTTEST: gi|701858|gb|D48149.1|D48149
genomic: CTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATTgttagttgca ... ttttttccagATCTCTACTACAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTT
EST: GAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATT ATCTCTACTACAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTT
genomic: GAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATTgttagttgca ... ttttttccagATCTCTACTACAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTTGCTACTGGAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATTgttagttgcatccccattaattttcaggcatgctactttcgaagaatatataatttatttatttttattttttttccag
- - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC