1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTTCTTGCTACAGGAGTTACAACCTGGTTATTAGACAGAGCTGGCCGACGGATCCTCCTTATCgtaattctcttcctcctgaaactaaagcatgctaattttctgtattctgtgaccataataaagctctcgcttcaacttctag
species | Oryza sativa |
transcript | LOC_Os05g49270.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CCTGGTTATTAGACAGAGCTGTCCGACGGATCCTCCTTATC ATCTCTTCTGCTGGGATGACTCTAAGCCTCCTTGCAGTTGCTGTTGTATTTEST: gi|86501749|gb|CI144382.1|CI144382
genomic: CCTGGTTATTAGACAGAGCTGGCCGACGGATCCTCCTTATCgtaattctct ... caacttctagATCTCTTCTGCTGGGATGACTCTAAGCCTCCTTGCAGTTGCTGTTGTATTT
EST: GAGTTACAACCTGGTTATTAGACAGAGCTGGCCGACGGATCCTCCTTATC ATCTCTTCTGCTGGGATGACTCTAAGCCTCCTTGCAGTTGCTGTTGTATTTEST: gi|87021810|gb|CI277977.1|CI277977
genomic: GAGTTACAACCTGGTTATTAGACAGAGCTGGCCGACGGATCCTCCTTATCgtaattctct ... caacttctagATCTCTTCTGCTGGGATGACTCTAAGCCTCCTTGCAGTTGCTGTTGTATTT
EST: GAGTTACAACCTGGTTATTAGACAGAGCTGNCCGACGGATCCTCCTTATC ATCTCTTCTGCTGGGGATGACTCTAAGCCTCCTTGCAGTTGCTGTTGTATTEST: gi|29687040|gb|CB683315.1|CB683315
genomic: GAGTTACAACCTGGTTATTAGACAGAGCTGGCCGACGGATCCTCCTTATCgtaattctct ... caacttctagATCTCTTCTGCT-GGGATGACTCTAAGCCTCCTTGCAGTTGCTGTTGTATT
EST: GAGTTACAACCTGGTTATTAGACAGAGCTGGCCGACGGATCCTCCTTATC ATCTCTTCTGCTGGGATGACTCTAAGCCTCCTTGCAGTTGCTGTTGTATTT
genomic: GAGTTACAACCTGGTTATTAGACAGAGCTGGCCGACGGATCCTCCTTATCgtaattctct ... caacttctagATCTCTTCTGCTGGGATGACTCTAAGCCTCCTTGCAGTTGCTGTTGTATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTTGCTACAGGAGTTACAACCTGGTTATTAGACAGAGCTGGCCGACGGATCCTCCTTATCgtaattctcttcctcctgaaactaaagcatgctaattttctgtattctgtgaccataataaagctctcgcttcaacttctag
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