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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGAAGCCATCCGAGATGCCATTTGAAAAGGAGGAATTGCTGAATGCAGCCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgttttgctcaagatggtacctttttcagcttcattctgagtgaattggcagcttggcataaactatattggtttaggtatatgtaaaaatattactaccttataaaaagaaggtgatgaagtacttcaattttcatgagcag

Basic information

species Oryza sativa
transcript LOC_Os05g46720.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g46720.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G174990_T03 (Zea mays), 5'ss of exon 13
AACGAAGCCATCCGAGATGCCATTTGAAAAGGAGGAATTGCTGAATGCAGCCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgta--ggcttgttttgc----tcaagatggtacctttttcagcttcattctgagtgaattggcagcttggcataaactatattggtttaggtatatgtaaaaatattactaccttataaaaagaaggtgatgaagtacttcaattttcatgagcag
 |||||||| ||||||||||| ||||| ||||||||  |||| || |||||||||||||| ||||| ||  | ||||||||| | ||||| || |||||||||  |||||||| ||     ||||    |   |||| |   |||   |||  ||   |  |||   | | |    ||        |    || ||| ||||||||                                                  
GACGAAGCCGTCCGAGATGCCGTTTGAGAAGGAGGAGCTGCTCAACGCAGCCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAGgtacgggcttgttctgtacgttcaaacctgctgctttct-gtctttgatctcggttggt--gcaaactagaactgcctgcc---agtagaatacatggaaaaatat--------------------------------------------------

upper sequence: LOC_Os05g46720.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G355610_T01 (Zea mays), 5'ss of exon 13
AACGAAGCCATCCGAGATGCCATTTGAAAAGGAGGAATTGCTGAATGCAGCCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgttttgctcaagatggtacctttttcagcttcattctgagtgaattggcagcttggcataaactatattggtttaggtatatgtaaaaatattactaccttataaaaagaaggtgatgaagtacttcaattttcatgagcag
||||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||| | || || |||||||| ||  ||||||| |  ||||          | ||  |  ||| |  |    |||  | |       | ||    || |   | |     |   |  || | || |    ||                                        
AACGAAGCCGTCTGAGATGCCGTTTGAAAAGGAAGAATTGCTCAATGCAGCCGTCCGCCGTGTGGATGCATTGGAAGCTGAGCTGATTTCCACAAAGAAAgtgagcttgttcttttcaa----------tctttggtctcaattggtacaaatcagaaatacatgaaaactattactccatgacaacaacacatgaaaactattgttcta----------------------------------------

upper sequence: LOC_Os05g46720.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA04G03230.1 (Glycine max), 5'ss of exon 11
AACGAAGCCATCCGAGATGCCATTTGAAAAGGAGGAATTGCTGAATGCAGCCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgttttgctcaagatggtacctttttcagcttcattctgagtgaattggcagcttggcataaactatattggtttaggtatatgtaaaaatattactaccttataaaaagaaggtgatgaagtacttcaattttcatgagcag
| | |||||    | |||||||  ||| || |||||  ||||  |||| || ||    |||||||||||||| ||||| ||||| ||  |||||||||||||| |   ||  |           ||  ||||   |  | ||| | |   | || |        ||| |||                                                                               
ATCAAAGCCTAGTGTGATGCCACATGAGAAAGAGGAGCTGCTCGATGCTGCTGTTTATCGTGTGGATGCATTGGAAGCAGAGTTGATAGCTACAAAGAAGgtatgtgagtggtagattgctcaataatttttggtgtgtaattataaactagtttgttcaacatcattaacag-----------------------------------------------------------------------------

upper sequence: LOC_Os05g46720.2 (Oryza sativa), 5'ss of exon 12
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 13
AACGAAGCCATCCGAGATGCCATTTGAAAAGGAGGAATTGCTGAATGCAGCCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgttttgctcaagatggtacctttttcagcttcattctgagtgaattggcagcttggcataaactatattggtttaggtatatgtaaaaatattactaccttataaaaagaaggtgatgaagtacttcaattttcatgagcag
| | || ||||| |||||||| | ||| || ||||||||||||||||| || ||  ||||||| |||||  ||||||| ||||||||  |||| || |||||| |     | || |        ||  || ||||  | ||  ||||  |||     | |||||    ||  || ||  | ||| |   |  |     |  | | | | || ||                                    
AGCAAAACCATCAGAGATGCCTTATGAGAAAGAGGAATTGCTGAATGCTGCTGTATGCCGTGTTGATGCCCTAGAAGCTGAGTTAATTGCTACCAAAAAGgtatgaaatctatggt-------ataagttgttcatttcca--ctgacagaagcccaatcttggtcataataatctt--tctagcttccttca----caccatttcatgattaat-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88998313|gb|CI038198.1|CI038198
EST:     GTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: GTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|86870320|gb|CI319426.1|CI319426
EST:     CCGTCCCCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|86430027|gb|CI082450.1|CI082450
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|58694963|gb|CK083650.1|CK083650
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|58587195|gb|CF985503.1|CF985503
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|29624626|gb|CB629637.1|CB629637
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|86838843|gb|CI330283.1|CI330283
EST:     CATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|33659364|gb|CF281977.1|CF281977
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|86881627|gb|CI322623.1|CI322623
EST:     TGGATGCAGTAGAAGGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTGGCGTACATTGAC
genomic: TGGATGCATTAGAA-GCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|218484643|gb|FG956652.1|FG956652
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|25798655|gb|CA754616.1|CA754616
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACNAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|89189526|gb|CI049065.1|CI049065
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|86889917|gb|CI319906.1|CI319906
EST:     CGTCCGCCGTGTGGATGCAGTTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CGTCCGCCGTGTGGATGCA-TTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|33659365|gb|CF281978.1|CF281978
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGGC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|3768326|gb|AU032353.1|AU032353
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTT-ATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|29640889|gb|CB645896.1|CB645896
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|58688451|gb|CK077138.1|CK077138
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|88971451|gb|CI017765.1|CI017765
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|88842892|gb|CI371792.1|CI371792
EST:     CCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|29630848|gb|CB635857.1|CB635857
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|38479445|gb|CF963564.1|CF963564
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|86539467|gb|CI179673.1|CI179673
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|15855575|gb|BI808387.1|BI808387
EST:     TGTGGATCCACTTAGAAGCCGAGTTAATCTCTACACAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGA
genomic: TGTGGATGCA-TTAGAAGCCGAGTTAATCTCTACA-AAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGA
EST: gi|86866325|gb|CI336939.1|CI336939
EST:     GATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: GATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|18387975|gb|BM421173.1|BM421173
EST:     CCGAGTTTAATCTTCTACAAAGAAG                         GCTCTCTATGAAGCCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGA
genomic: CCGAG-TTAATC-TCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAG-CCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGA
EST: gi|15857007|gb|BI809819.1|BI809819
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|86840926|gb|CI335092.1|CI335092
EST:     CCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|58692306|gb|CK080993.1|CK080993
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|29628430|gb|CB633441.1|CB633441
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|86897435|gb|CI294415.1|CI294415
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|58691665|gb|CK080352.1|CK080352
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|86252637|gb|CI003973.1|CI003973
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAGG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|218503288|gb|FG958662.1|FG958662
EST:     TCCGCCGTGTGGATGCATTAGAAGCCGAATTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGGCTTGCGTACATTGA
genomic: TCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCT-GCTTGCGTACATTGA
EST: gi|29665230|gb|CB661505.1|CB661505
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|33657794|gb|CF280408.1|CF280408
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|86845777|gb|CI347055.1|CI347055
EST:     TCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: TCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|29631057|gb|CB636066.1|CB636066
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|29628212|gb|CB633223.1|CB633223
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|86896121|gb|CI330082.1|CI330082
EST:     AAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATTCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: AAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|29623353|gb|CB628364.1|CB628364
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
EST: gi|58590767|gb|CF989075.1|CF989075
EST:     CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAG                         GCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC
genomic: CCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgt ... tcatgagcagGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACATTGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACGAAGCCATCCGAGATGCCATTTGAAAAGGAGGAATTGCTGAATGCAGCCGTCCGCCGTGTGGATGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGgtaggcttgttttgctcaagatggtacctttttcagcttcattctgagtgaattggcagcttggcataaactatattggtttaggtatatgtaaaaatattactaccttataaaaagaaggtgatgaagtacttcaattttcatgagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG