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TGGTGCCTTCAAACCAACTGCTGTATTTGTTCCTCTATCGGAAATCCTTAAAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatttttgatgcattgtcttgccacgattagatacaattttttatttaacggtaacctggcatagctatgacatgaattttgttaacctactgc...
species | Oryza sativa |
transcript | LOC_Os05g45960.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAG GTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTEST: gi|44673853|gb|CR287287.1|CR287287
genomic: GAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatt ... atatgcgcagGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
EST: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAG GTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTEST: gi|88848173|gb|CI086695.1|CI086695
genomic: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatt ... atatgcgcagGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
EST: AGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAG GTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTEST: gi|9865361|gb|AU101111.1|AU101111
genomic: AGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatt ... atatgcgcagGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
EST: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAG GTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTEST: gi|88962017|gb|CI097170.1|CI097170
genomic: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatt ... atatgcgcagGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
EST: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAG GTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTEST: gi|89180443|gb|CI044722.1|CI044722
genomic: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatt ... atatgcgcagGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
EST: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAG GTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTEST: gi|88907945|gb|CI090541.1|CI090541
genomic: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatt ... atatgcgcagGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
EST: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAG GTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTEST: gi|29632954|gb|CB637963.1|CB637963
genomic: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatt ... atatgcgcagGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
EST: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAG GTGGTTACAGAGTATTTTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTEST: gi|86851512|gb|CI314095.1|CI314095
genomic: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatt ... atatgcgcagGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
EST: AAAGTGCCAATTTTGAGCTT-TGACAAGGGAGATCTTTGGTCCTTTCCAG GTGGTTACAGAGTATTCTGATTATGAGCTTGAATTAGTATTAGAAGCCTATEST: gi|58656949|gb|CK045629.1|CK045629
genomic: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatt ... atatgcgcagGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
EST: TTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAG GTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTEST: gi|29617924|gb|CB622936.1|CB622936
genomic: TTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatt ... atatgcgcagGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
EST: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAG GTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTEST: gi|88968032|gb|CI098274.1|CI098274
genomic: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatt ... atatgcgcagGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
EST: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAG GTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTEST: gi|218484591|gb|FG954366.1|FG954366
genomic: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatt ... atatgcgcagGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
EST: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAG GTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTEST: gi|88908314|gb|CI090907.1|CI090907
genomic: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatt ... atatgcgcagGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
EST: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAG GTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTEST: gi|88976781|gb|CI257525.1|CI257525
genomic: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatt ... atatgcgcagGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
EST: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAG GTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTEST: gi|86493002|gb|CI135635.1|CI135635
genomic: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatt ... atatgcgcagGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
EST: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAG GTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
genomic: AAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatt ... atatgcgcagGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGCCTTCAAACCAACTGCTGTATTTGTTCCTCTATCGGAAATCCTTAAAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGgtaagagatttttgatgcattgtcttgccacgattagatacaattttttatttaacggtaacctggcatagctatgacatgaattttgttaacctactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC