1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATGGGTAACAAGGGTGCATACATTCGGTTCACAGCTCCAGAACTAAAACCAAATATTTCCTCTTTCTCAGCGGTGgtgagtacattacactattactctatttcttgcaacaagattagtatcccaagaaatagaagactgtatgtggcagtagtatgtttttgtaggaagctgg...
species | Oryza sativa |
transcript | LOC_Os05g11550.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GGTTCACAGCTCCAGAACTAAAACCAAATATTTCCTCTTTCTCAGCGGTG CCACACCCTGACGTCAAGCCGATGGCCTACGCGAACAACTTCCTCAGGATGEST: gi|29630244|gb|CB635253.1|CB635253
genomic: GGTTCACAGCTCCAGAACTAAAACCAAATATTTCCTCTTTCTCAGCGGTGgtgagtacat ... catcttgcagCCACACCCTGACGTCAAGCCGATGGCCTACGCGAACAACTTCCTCAGGATG
EST: GGTTCACAGCTCCAGAACTAAAACCAAATATTTCCTCTTTCTCAGCGGTG CCACACCCTGACGTCAAGCCGATGGCCTACGCGAACAACTTCCTCAGGATGEST: gi|163920084|gb|EG712026.1|EG712026
genomic: GGTTCACAGCTCCAGAACTAAAACCAAATATTTCCTCTTTCTCAGCGGTGgtgagtacat ... catcttgcagCCACACCCTGACGTCAAGCCGATGGCCTACGCGAACAACTTCCTCAGGATG
EST: GGTTCACAGCTCCAGAACTAAAACCAAATATTTCCTCTTTCTCAGCGGTG CCACACCCTGACGTCAAGCCGATGGCCTACGCGAACAACTTCCTCAGGATGEST: gi|58677449|gb|CK066136.1|CK066136
genomic: GGTTCACAGCTCCAGAACTAAAACCAAATATTTCCTCTTTCTCAGCGGTGgtgagtacat ... catcttgcagCCACACCCTGACGTCAAGCCGATGGCCTACGCGAACAACTTCCTCAGGATG
EST: GGTTCACAGCTCCAGAACTAAAACCAAATATTTCCTCTTTCTCAGCGGTG CCACACCCTGACGTCAAGCCGATGGCCTACGCGAACAACTTCCTCAGGATG
genomic: GGTTCACAGCTCCAGAACTAAAACCAAATATTTCCTCTTTCTCAGCGGTGgtgagtacat ... catcttgcagCCACACCCTGACGTCAAGCCGATGGCCTACGCGAACAACTTCCTCAGGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGGTAACAAGGGTGCATACATTCGGTTCACAGCTCCAGAACTAAAACCAAATATTTCCTCTTTCTCAGCGGTGgtgagtacattacactattactctatttcttgcaacaagattagtatcccaagaaatagaagactgtatgtggcagtagtatgtttttgtaggaagctgg
- - - - - - - - - - - - - - - CAGCTC