1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAGgtaaaacttctactgtgagtgttttgcttatatttgcattcaatgtacttttttttttggataattgaattcattccaccctcttaactgaaatgtatcc...
species | Oryza sativa |
transcript | LOC_Os05g10810.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAG GAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAGEST: gi|29615462|gb|CB620474.1|CB620474
genomic: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAGgtaaaacttc ... tttctttcagGAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAG
EST: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAG GAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAGEST: gi|29664325|gb|CB660600.1|CB660600
genomic: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAGgtaaaacttc ... tttctttcagGAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAG
EST: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAG GAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAGEST: gi|25803480|gb|CA759449.1|CA759449
genomic: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAGgtaaaacttc ... tttctttcagGAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAG
EST: GTATATCAAAG GAAG-TGNCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAGEST: gi|29641508|gb|CB646515.1|CB646515
genomic: GTATATCAAAGgtaaaacttc ... tttctttcagGAAGTTG-CTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAG
EST: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAG GAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAGEST: gi|29664324|gb|CB660599.1|CB660599
genomic: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAGgtaaaacttc ... tttctttcagGAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAG
EST: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAG GAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAGEST: gi|29664362|gb|CB660637.1|CB660637
genomic: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAGgtaaaacttc ... tttctttcagGAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAG
EST: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAG GAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAGEST: gi|29646484|gb|CB651491.1|CB651491
genomic: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAGgtaaaacttc ... tttctttcagGAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAG
EST: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAG GAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAGEST: gi|88520579|gb|CI448233.1|CI448233
genomic: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAGgtaaaacttc ... tttctttcagGAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAG
EST: GGGTTGTTCCCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAGG GAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAGEST: gi|29614065|gb|CB619078.1|CB619078
genomic: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAA-Ggtaaaacttc ... tttctttcagGAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAG
EST: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAG GAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAGEST: gi|66928227|gb|CX115075.1|CX115075
genomic: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAGgtaaaacttc ... tttctttcagGAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAG
EST: GGGTTG-TCGCCATA-TTACTTTCCTTGCATGCGAAATGGTATATCAAAG GAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAGEST: gi|29615460|gb|CB620472.1|CB620472
genomic: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAGgtaaaacttc ... tttctttcagGAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAG
EST: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAG GAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAG
genomic: GGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAGgtaaaacttc ... tttctttcagGAAGTTGCTGTCTTGATATCATTCCTTGTTTCTGCCGTACTCCATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAGgtaaaacttctactgtgagtgttttgcttatatttgcattcaatgtacttttttttttggataattgaattcattccaccctcttaactgaaatgtatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccctc