1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AATGACTTGGTTCATGGATGGGGCCTTGATTTTGCTCTCAGGAAATGCGTGGAGgtataggttaccttttggctgttaaatttcaccggcctggtagaacttcattatgaatatgctcaccaaatgctttgtgcatttcag
species | Oryza sativa |
transcript | LOC_Os05g01760.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ACTTGGTTCATGGATGGGGCCTTGATTTTGCTCTCAGGATATGCGTGGAG CCTGCTCACGATAAGATTGGGTTTGTTGATTCACAGTGGATTGTTCACCAAEST: gi|86256753|gb|CI061516.1|CI061516
genomic: ACTTGGTTCATGGATGGGGCCTTGATTTTGCTCTCAGGAAATGCGTGGAGgtataggtta ... tgcatttcagCCTGCTCACGAAAAGATTGGGGTTGTTGATTCACAGTGGATTGTTCACCAA
EST: ACTTGGTTCATGGATGGGGCCTTGATTTTGCTCTCAGGAAATGCGTGGAG CCTGCTCACGAAAAGATTGGGGTTGTTGATTCACAGTGGATTGTTCACCAAEST: gi|88247670|gb|CI247519.1|CI247519
genomic: ACTTGGTTCATGGATGGGGCCTTGATTTTGCTCTCAGGAAATGCGTGGAGgtataggtta ... tgcatttcagCCTGCTCACGAAAAGATTGGGGTTGTTGATTCACAGTGGATTGTTCACCAA
EST: ACTTGGTTCATGGATGGGGCCTTGATTTTGCTCTCAGGAAATGCGTGGAG CCTGCTCACGAAAAGATTGGGGTTGTTGATTCACAGTGGATTGTTCACCAAEST: gi|86480070|gb|CI122703.1|CI122703
genomic: ACTTGGTTCATGGATGGGGCCTTGATTTTGCTCTCAGGAAATGCGTGGAGgtataggtta ... tgcatttcagCCTGCTCACGAAAAGATTGGGGTTGTTGATTCACAGTGGATTGTTCACCAA
EST: ACTTGGTTCATGGATGGGGCCTTGATTTTGCTCTCAGGAAATGCGTGGAG CCTGCTCACGAAAAGATTGGGGTTGTTGATTCACAGTGGATTGTTCACCAAEST: gi|29674708|gb|CB670983.1|CB670983
genomic: ACTTGGTTCATGGATGGGGCCTTGATTTTGCTCTCAGGAAATGCGTGGAGgtataggtta ... tgcatttcagCCTGCTCACGAAAAGATTGGGGTTGTTGATTCACAGTGGATTGTTCACCAA
EST: ACTTGGTTCATGGATGGGGCCTTGATTTTGCTCTCAGGAAATGCGTGGAG CCTGCTCACGAAAAGATTGGGGTTGTTGATTCACAGTGGATTGTTCACCAAEST: gi|86480080|gb|CI122713.1|CI122713
genomic: ACTTGGTTCATGGATGGGGCCTTGATTTTGCTCTCAGGAAATGCGTGGAGgtataggtta ... tgcatttcagCCTGCTCACGAAAAGATTGGGGTTGTTGATTCACAGTGGATTGTTCACCAA
EST: ACTTGGTTCATGGATGGGGCCTTGATTTTGCTCTCAGGAAATGCGTGGAG CCTGCTCACGAAAAGATTGGGGTTGTTGATTCACAGTGGATTGTTCACCAAEST: gi|86479999|gb|CI122632.1|CI122632
genomic: ACTTGGTTCATGGATGGGGCCTTGATTTTGCTCTCAGGAAATGCGTGGAGgtataggtta ... tgcatttcagCCTGCTCACGAAAAGATTGGGGTTGTTGATTCACAGTGGATTGTTCACCAA
EST: ACTTGGTTCATGGATGGGGCCTTGATTTTGCTCTCAGGAAATGCGTGGAG CCTGCTCACGAAAAGATTGGGGTTGTTGATTCACAGTGGATTGTTCACCAA
genomic: ACTTGGTTCATGGATGGGGCCTTGATTTTGCTCTCAGGAAATGCGTGGAGgtataggtta ... tgcatttcagCCTGCTCACGAAAAGATTGGGGTTGTTGATTCACAGTGGATTGTTCACCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGACTTGGTTCATGGATGGGGCCTTGATTTTGCTCTCAGGAAATGCGTGGAGgtataggttaccttttggctgttaaatttcaccggcctggtagaacttcattatgaatatgctcaccaaatgctttgtgcatttcag
- - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - GTGGAG